Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq503 105 5e-18 seq2682 82.4 6e-11 >seq503 Length=216272 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | |||||| || |||||||||||||| || ||||| | | Sbjct 161862 CCACCACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAGTCTGAC 161803 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||||| || || |||| | ||| |||||||| || Sbjct 161802 AGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGA 161743 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| ||| | |||||| | | ||| |||||| | ||| | Sbjct 161742 ATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCAACT 161683 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || || |||| || || | ||||||||||||||||||||| Sbjct 161682 TCCAGAGTTATCGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 161635 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||||| ||||| || |||||||| || ||||||| | Sbjct 162782 CCACCACGAAGGCGAAGAACAAGATGAAGAGTTGACTCCTTTTGAATATTATAGTCGGAC 162723 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || || ||||||||||| || || |||| | ||| |||||||| || Sbjct 162722 AGCGTGCGACCGTCCTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGA 162663 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| ||| | |||||| | | | | |||||| | ||| | Sbjct 162662 ATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCGATAGTGTCTGAAGCCTCCACT 162603 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || || |||| || || | ||||||||||||||||||||| Sbjct 162602 TCTAGAGTTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTGCATT 162555 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||| || |||||||| || ||||||||||| || | Sbjct 161107 CCACCACGAAGACGAAGAACAAGGTGGAGAGTTGATTCCTTCTGAATGTTGTAATCTGAT 161048 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||||| |||||| |||||| | || | ||| |||||||| || Sbjct 161047 AGTGTGCGTCCATCTTCCAGTTGTTTACCCGCAAAAATCAATCTCTGTTGATCTGGCGGA 160988 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| |||| || || | | | | ||||| | || Sbjct 160987 ATTCCTTCCTTATCTTGAATTT-TTGCTTTTACATTTTCTATCGTGTCGGAAGCTTCAAC 160929 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| |||| || || | || || || ||||||||||| Sbjct 160928 TTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 160881 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | |||||| || ||||| |||||||| || ||||| | | Sbjct 160879 CCACCACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCTGAC 160820 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||||| || || |||| | ||| |||||||| || Sbjct 160819 AGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGA 160760 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| ||| | |||||| | | ||| |||||| | ||| | Sbjct 160759 ATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGATGCCTCAACT 160700 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || || |||| || || | || || || |||||||||||| Sbjct 160699 TCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCATT 160652 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/237 (68%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || | ||| || | |||||| || ||||| || ||||| ||||| || | Sbjct 162555 TCCTCCTCTGAGACGAAGAACAAGGTGAAGAGTCGATTCCTTCTGAATATTGTAATCTGA 162496 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA---- 18213 | ||| | |||||||| |||||| |||||| | || | ||| ||||||||| Sbjct 162495 TAGTGTGCGTCCATCTTCCAGTTGTTTACCCGCAAAAATCAATCTCTGTTGATCCGGCGA 162436 Query 18214 -CGGGC---ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCG 18269 | ||| | ||||| ||||| ||| | |||||| | | | | |||||| Sbjct 162435 TCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCGATAGTGTCTGAA 162376 Query 18270 GGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 | ||| ||| | || || |||| || || | ||||||||||||||||||||| Sbjct 162375 GCCTCCACTTCTAGAGTTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTGCATT 162319 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | |||||| || |||||||||||||| || ||||| | | Sbjct 162090 CCACCACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAGTCTGAC 162031 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||||| || || |||| | ||| |||||||| || Sbjct 162030 AGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGA 161971 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| ||| | ||| || | | ||| |||||| | ||| | Sbjct 161970 ATACCTTCTTTATCCTGAATCTTGGCCTTAACATTTTCAATAGTGTCTGAAGCCTCAACT 161911 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || |||| || || | || || || ||||||||||| Sbjct 161910 TCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 161864 >seq2682 Length=416 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || | ||| || | ||||| || ||||| |||||||| || ||||| | Sbjct 93 TCCTCCTCTGAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAGTCTGA 152 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | |||||||||||||| || || |||| | ||| |||||||| || Sbjct 153 CAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCACTCTCTGTTGATCGGGTGG 212 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||| | |||||| | | ||| |||||| | ||| Sbjct 213 AATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCAAC 272 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || |||| || || | || || || ||||||||||| Sbjct 273 TTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379318299325455