Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2682 125 6e-24 seq503 120 3e-22 seq1274 114 1e-20 seq739 105 6e-18 >seq2682 Length=416 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || ||||| |||||||| || | || ||||| | || Sbjct 320 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCA 261 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| ||||| | || ||| || ||||| | || ||||| || Sbjct 260 GACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAA 201 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || |||||||| ||||| ||||||||| || || || ||||| Sbjct 200 CAGAGAGTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAAT 141 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||||||||||||||| || ||| | || || || || Sbjct 140 ATTCAAAAGGAATCGACTCTTCATCTTGTTCTTCGTCTCAGAGGAGG 94 >seq503 Length=216272 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || ||||| |||||||| || | || ||||| | || Sbjct 160653 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCATCA 160712 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| ||||| | || ||| || ||||| | || ||||| || Sbjct 160713 GACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAA 160772 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || |||||||| ||||| ||||||||| || || || ||||| Sbjct 160773 CAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAAT 160832 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| |||||||||||||| || || ||| | || | || |||| Sbjct 160833 ATTCAAAAGGAATCGACTCTTCACCTTGTTCTTCGCCTTCGTGGTGGTA 160881 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| ||||| || || ||||| |||||||| || | || ||||| | || Sbjct 161636 ATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACGATAACTCTGGAAGTTGAGGCTTCA 161695 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| ||||| | || ||| || ||||| | ||||| || || Sbjct 161696 GACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAA 161755 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || |||||||| ||||| ||||||||| || || || ||||| Sbjct 161756 CAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAAT 161815 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||||||||||||||| || || ||| | || | || |||| Sbjct 161816 ATTCAAAAAGAATCGACTCTTCACCTTGTTCTTCGCCTTCGTGGTGGTA 161864 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || ||||| |||||||| || | || ||||| | || Sbjct 161864 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCA 161923 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| || || | || ||| || ||||| | ||||| || || Sbjct 161924 GACACTATTGAAAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAA 161983 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || |||||||| ||||| ||||||||| || || || ||||| Sbjct 161984 CAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAAT 162043 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||||||||||||||| || || ||| | || | || |||| Sbjct 162044 ATTCAAAAAGAATCGACTCTTCACCTTGTTCTTCGCCTTCGTGGTGGTA 162092 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || ||||| ||||| ||||| | || |||||| | ||| Sbjct 160881 ATGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 160940 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | ||| || |||||||| | ||||| || || Sbjct 160941 GACACGATAGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGAATTCCGCCAGATCAA 161000 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG---ACTATGAGCGATTAT 31369 ||| | | || || || || ||||| ||||||| | | | ||||| | ||||| Sbjct 161001 CAGAGATTGATTTTTGCGGGTAAACAACTGGAAGA-TGGACGCACACTATCA--GATTAC 161057 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || ||||| ||||| || || || ||| | || | || |||| Sbjct 161058 AACATTCAGAAGGAATCAACTCTCCACCTTGTTCTTCGTCTTCGTGGTGGTA 161109 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| ||||| || || || || |||||||| || | || || || | || Sbjct 162556 ATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTCA 162615 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| ||||| | || ||| || ||||| | || ||||| || Sbjct 162616 GACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAA 162675 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || |||||||| ||||| ||||| ||| | || || ||| ||||| Sbjct 162676 CAGAGATTGATCTTCGCTGGTAAACAATTGGAGGACGGTCGCACGCTGTCCGACTATAAT 162735 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||||| || || ||||||||||| || ||| Sbjct 162736 ATTCAAAAGGAGTCAACTCTTCATCTTGTTCTT 162768 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || ||||| ||||| ||||| | || |||||| | ||| Sbjct 162092 ATGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 162151 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| ||||| ||||| | || || ||||| Sbjct 162152 GATACGATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGAATTCCTCCAGACCAA 162211 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| || || | ||||| || | ||||| || Sbjct 162212 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTCTCTGATTACAAT 162271 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| ||||| || || ||||| |||||| | ||||| || || Sbjct 162272 ATACAAAAGGAATCAACCCTGCATCTTGTACTTCGTCTGAGAGGAGG 162318 >seq1274 Length=440581 Score = 114 bits (126), Expect = 1e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 57668 TGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAA 57727 ||||| | |||| || || || || || || || || || || ||||| || ||||| Sbjct 124639 TGAGAAACATTTCATATCTCATGTCTTAGCATTCTTTGCGGCTTCTGATGGAATCGTTAA 124580 Query 57728 CGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTA 57787 |||||| | |||||| ||||| || ||||| ||||| || ||||| | || || || Sbjct 124579 TGAGAATCTTGTCGAACGATTTAGTCAGGAAGTACAAGTAACCGAGGCACGTTGTTTCTA 124520 Query 57788 CGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATAC 57847 || |||||||| ||||| ||||| ||||| ||||||||||| || | | || ||||| Sbjct 124519 TGGTTTTCAAGTCGCCATAGAAAATGTGCACTCAGAAATGTACTCCATGTTGATTGATAC 124460 Query 57848 GTA 57850 || Sbjct 124459 ATA 124457 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 58333 AAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaa 58392 |||||||||||||||||||| | | ||||| | || || || ||||||||||| |||| Sbjct 123605 AAAATCCGTTTGATTTTATGGAGCACATCTCTTTAGAAGGTAAAACAAACTTTTTTGAAA 123546 Query 58393 aaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 | ||||| | || |||||||||| || || ||| Sbjct 123545 AGAAAGTAGGAGAGTATCAAAAATGGGGAGTAATG 123511 >seq739 Length=1399493 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || ||||| ||||| | ||||| ||||| || || | || |||||| | Sbjct 6801 AACATGCAGATCTTCGTTAAGACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGCT 6860 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | || | || ||| | || ||||| ||||| | || || ||| Sbjct 6861 TCTGACACAATAGAGAATGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGAC 6920 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||| | || || |||||||||||| | ||||| | ||| | |||||| Sbjct 6921 CAGCAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTAT 6980 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| ||||| || || || ||| | ||| | ||||| Sbjct 6981 AACATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACT 7021 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || ||||| || || || || ||||| |||||| | || |||||| | || Sbjct 7974 ATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATCACCTTGGAAGTTGAAGCATCT 8033 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | ||| |||||| || || | || || |||||| Sbjct 8034 GACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCAG 8093 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || || |||||||||||| | ||||| | ||| | ||||||||| Sbjct 8094 CAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTATAAC 8153 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || ||||| || || || ||| | ||| | ||||| Sbjct 8154 ATCCAGAAAGAGTCCACACTCCATTTAGTATTGAGACT 8191 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || ||||| || || || || ||||| || ||| | || |||||| | || Sbjct 7032 ATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATTACCTTGGAAGTTGAAGCATCT 7091 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | ||| |||||| || || | || || |||||| Sbjct 7092 GACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCAG 7151 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || || ||||||||||| | ||||| | ||| | ||||||||| Sbjct 7152 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 7211 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||| ||||| || || || ||| | ||| | ||||| Sbjct 7212 ATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACT 7249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445735424807280