Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq418 143 3e-29 seq1274 100 4e-16 >seq418 Length=3833963 Score = 143 bits (158), Expect = 3e-29 Identities = 181/247 (73%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 62316 ATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGA 62375 ||||| ||| || || || |||| ||| | | ||| || || | | ||| | | | Sbjct 2670163 ATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTTTCAGTCAGATCTCGTAATAAA 2670104 Query 62376 TGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 62435 || || || || ||||| || ||||||||||| ||||| | | ||||||||||||||| Sbjct 2670103 TGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCATAAATATTACTGGTA 2670044 Query 62436 TACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 62495 || ||||| | || ||||||||||| || ||||| ||||| ||||| || |||||||| Sbjct 2670043 TATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGATGCCGTTGGCATAGGG 2669984 Query 62496 GCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCC 62553 || | |||||| |||||||| || ||||| | ||||| ||||| ||| | || Sbjct 2669983 GCGATTAATAAAGAATTTCTAACTCC--ATGTTTAGCAATTTTTTCTTTCAGAATTGTCC 2669926 Query 62554 AATTCCA 62560 | ||||| Sbjct 2669925 AGTTCCA 2669919 Score = 141 bits (156), Expect = 1e-28 Identities = 218/306 (71%), Gaps = 4/306 (1%) Strand=Plus/Minus Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399 |||||||||||||||| | || | | ||||| | |||||| ||||| || ||||| | Sbjct 2668758 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 2668699 Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459 | | |||| || | ||| |||||||| ||||| | |||| ||| || ||||| || | Sbjct 2668698 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 2668639 Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCT-CCA 63518 |||| | ||||||||| | ||| || |||| |||| ||||| | || | | | || Sbjct 2668638 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTAT-TGGTGTGCCT 2668580 Query 63519 CTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63577 || || |||||| | || | | || || || || || || ||| || | ||| Sbjct 2668579 CTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTAATAAGTGC 2668521 Query 63578 GCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 |||| |||||| || ||||| || || |||||||||||||| |||| | |||| ||| Sbjct 2668520 ACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAAA 2668461 Query 63638 ACAGCT 63643 ||| || Sbjct 2668460 ACAACT 2668455 Score = 123 bits (136), Expect = 3e-23 Identities = 238/347 (69%), Gaps = 12/347 (3%) Strand=Plus/Minus Query 62787 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 62846 ||||| ||||| |||||| | ||| || ||| ||||| ||| ||||||||||| Sbjct 2669505 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCATGAACCGGATAATAATTC 2669446 Query 62847 ATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTG 62903 | ||| |||||||| | | ||| | | |||||| |||| || | |||||| Sbjct 2669445 ACATCGATAATTTTGTCTAAATTACAAGTAACAATT--TTTGTT-ACTTTTCGCAGTTTT 2669389 Query 62904 AGAAAATCAAATCGCCCAT--CTA----TTACAAACATGTTCAATGCAACAGATGCCAGA 62957 |||||||||| | || || ||||||||||||||| ||| | || || | | Sbjct 2669388 TCAAAATCAAATGTCTGATTACTGGAGTTTACAAACATGTTCACTGCGATTGAAGCTAAA 2669329 Query 62958 TTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 63017 || || || || | |||| | | | |||||||| || || || || | |||||| Sbjct 2669328 TTGCATACAGCGATTTCATCTGGACTGGAATATTGTACGATTTCTGTACACAAATTACTG 2669269 Query 63018 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63077 | ||||| || ||||||||||| ||||| || ||||| ||| |||||||| Sbjct 2669268 CTTTTGATTGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATAAAGC 2669209 Query 63078 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63124 ||| | ||||| || ||||||| ||||| | | ||| ||| |||| Sbjct 2669208 ATGTAAGGAGTTCCTGTTTCAACTTGAGAAACAAGAATAGCTGTCCA 2669162 Score = 113 bits (124), Expect = 6e-20 Identities = 184/265 (69%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 ||||||||||| || | |||| | ||| ||| | | ||||| || || ||||| Sbjct 2668383 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 2668324 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63761 | ||| || | | |||||| || || |||||| || ||||| |||||| Sbjct 2668323 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGAATG 2668264 Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTC 63821 | ||||| || | |||||||||||| || ||||||||||||| ||| | |||||| Sbjct 2668263 GCAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACAACTTTCCCTTGTATTTTT 2668204 Query 63822 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63881 || || || | |||| | || ||||||||||| || || || |||||||| || Sbjct 2668203 AATAAATAACTTCTTTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAGTCTCTATCA 2668144 Query 63882 TAAATAATAACCGAATTGAGCTTAT 63906 ||||| || | ||||| | ||||| Sbjct 2668143 TAAATTATTGCAGAATTTAACTTAT 2668119 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| || || || |||||||||| | | |||| |||||| |||||||| || || Sbjct 2669005 TTCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGA 2668946 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63306 ||| | || | ||| |||||||||||||| |||||||| ||||| | ||| ||| | Sbjct 2668945 CCATACACCATTATCGAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGC-ATAGA 2668887 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT--ATTCTTTTTA 63350 ||| ||||||| ||||| ||| || || ||||| ||| || ||| Sbjct 2668886 ATAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 2668841 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 62622 CCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCA 62681 ||| |||| || ||||||| |||| || |||| |||| |||||| |||||||||||| Sbjct 2669756 CCTTCATAGGTTTCATATGTACCTTTCTCTGCAGCAAGTTCACAACTAGCCTCTAATGCA 2669697 Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAAT 62741 || ||||| | || ||||| || | |||| || | |||||||||| || ||||| Sbjct 2669696 CCATAATATAATGTCTCAAATATTTGGATATTAAGTTTTTGTGCTTCCTCACTTTCAAAC 2669637 Query 62742 GGATA 62746 ||||| Sbjct 2669636 GGATA 2669632 >seq1274 Length=440581 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 ||||||| | ||||||||| || || |||||||||||||| || || ||||||||||| | Sbjct 124742 CTTTAGAAAGATCCACTTCCTCAACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 124801 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||| |||||| | |||| || || || | ||| |||||| ||||||| Sbjct 124802 GCCAAATGTCAGGCCATTGAATAGGAAAGACAACGAATCTACGTGGATTT 124851 Score = 95.1 bits (104), Expect = 2e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 33387 TTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATC 33446 |||| | | || ||||| | || |||||||| || || ||||| |||||| ||| Sbjct 123700 TTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATATTGACACATA 123759 Query 33447 ATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCA 33506 | | ||| ||||||||||| | || ||| || | ||| | || | ||||||||||||| Sbjct 123760 AGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCTTCCGTTAAAAATTCTTGTTCA 123819 Query 33507 ATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAA 33566 || || |||| | | ||||| || | || || | ||| |||| | | Sbjct 123820 ATTTTGACGGCATCTTTAATAATTGATGTGACCCGATCGCAAGATGGTTTTTGTACAATA 123879 Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 ||||| |||||||||||||||||||| || || | |||| Sbjct 123880 TGTTTGAACATCAAACATGCGAAATCACAATGTAATCCCT 123919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629773835549520