Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq1913 158 2e-34 seq1614 140 7e-29 seq3883 109 1e-19 seq916 102 2e-17 seq3267 84.2 4e-12 >seq1913 Length=212763 Score = 158 bits (174), Expect = 2e-34 Identities = 150/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 720 CGGGTTGAATTTGACCGCACTTTCTAAGTGCGAAGGGGCGAAGTGCGCATAACGCATCGT 779 ||| || || | |||||| ||| ||||| ||| || ||||| ||||| ||||| || Sbjct 83288 CGGATTCAACCTTACCGCATCTTCAAAGTGATCAGGCGCAAAGTGTGCATATCGCATGGT 83229 Query 780 CATTTCGATAGTTGAATGACCGAGGATTTCTTTCAACACTAAAATATTCCCACCGTTCAT 839 ||||| |||| || || ||||| |||| || || |||||||| || ||||| ||||| Sbjct 83228 CATTTTGATATCTGTGTGGCCGAGTATTTTTTGTAAAACTAAAATGTTACCACCATTCAT 83169 Query 840 CATAAAATGGCTGGCGAACGTATGGCGCAAAACGTGGGTTAGTTGCCCTTTGGGTAACTC 899 |||||||||||||||||| |||||||| || |||||||||| ||| | || ||||| || Sbjct 83168 CATAAAATGGCTGGCGAAGGTATGGCGTAATACGTGGGTTAATTGTCGTTCGGGTAGTTC 83109 Query 900 AATTTCAGCACG 911 ||| | ||||| Sbjct 83108 TATTGCTGCACG 83097 Score = 138 bits (152), Expect = 2e-28 Identities = 76/76 (100%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 103454 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 103395 Query 418 ACTGAGCTAACGACCC 433 |||||||||||||||| Sbjct 103394 ACTGAGCTAACGACCC 103379 >seq1614 Length=125919 Score = 140 bits (154), Expect = 7e-29 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 38240 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 38181 Query 418 ACTGAGCTAACGACCCA 434 ||||||||||||||||| Sbjct 38180 ACTGAGCTAACGACCCA 38164 >seq3883 Length=158444 Score = 109 bits (120), Expect = 1e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 718 AGCGGGTTGAATTTGACCGCACTTTCTAAGTGCGAAGGGGCGAAGTGCGCATAACGCATC 777 || ||||| ||| | |||| ||| ||||| || || ||||| ||||||||||| Sbjct 35065 AGTGGGTTTAATATAGCCGCTTCTTCCAAGTGATCGGGTGCAAAGTGAGCATAACGCATT 35006 Query 778 GTCATTTCGATAGTTGAATGACCGAGGATTTCTTTCAACACTAAAATATTCCCACCGTTC 837 |||| || ||| | ||| || | |||| || | || | ||||| || |||||| Sbjct 35005 GTCACTTTAATATCAGTATGCCCTAATATTTTTTGTAGTACCAGTATATTGCCGCCGTTC 34946 Query 838 ATCATAAAATGGCTGGCGAACGTATGGCGCAAAACGTGGGTTAGTTGCCCTTTGGGTAAC 897 |||||||||||||||||||| || ||||| | ||||| |||| ||| || | ||||| Sbjct 34945 ATCATAAAATGGCTGGCGAATGTGTGGCGTAGTACGTGCGTTAATTGGCCGTCTGGTAAT 34886 Query 898 TCAAT 902 ||||| Sbjct 34885 TCAAT 34881 >seq916 Length=289624 Score = 102 bits (112), Expect = 2e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 766 GCATAACGCATCGTCATTTCGATAGTTGAATGACCGAGGATTTCTTTCAACACTAAAATA 825 ||||| | | | || |||| |||| | || ||||| |||| || || |||||||| Sbjct 65559 GCATATCTCGTGGTTATTTTGATACCGGTGTGGCCGAGTATTTTTTGTAAAACTAAAATG 65618 Query 826 TTCCCACCGTTCATCATAAAATGGCTGGCGAACGTATGGCGCAAAACGTGGGTTAGTTGC 885 || || ||||||||||| ||||||||| |||| || ||||| || |||||||||| ||| Sbjct 65619 TTTCCGCCGTTCATCATGAAATGGCTGACGAATGTGTGGCGTAATACGTGGGTTAATTGT 65678 Query 886 CCTTTGGGTAA 896 | || |||||| Sbjct 65679 CGTTCGGGTAA 65689 >seq3267 Length=144362 Score = 84.2 bits (92), Expect = 4e-12 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 350 AATATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTG 409 ||| | | |||||||| |||| || ||||||| ||||||| |||||| |||| ||| Sbjct 133721 AATTTAAATGGTGGGTTGTGAGGGGATCGAACCCGCGACCAATTGATTAAGAGTCAACTG 133662 Query 410 CTCTACCGACTGAGCTAACGACCC 433 ||||||||||||||||||| |||| Sbjct 133661 CTCTACCGACTGAGCTAACAACCC 133638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100697352214260