Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq916 205 3e-48 >seq916 Length=289624 Score = 205 bits (226), Expect = 3e-48 Identities = 733/1141 (64%), Gaps = 16/1141 (1%) Strand=Plus/Minus Query 30084 GAAATGAATGACAGCAGCGGTCGCTGGAGTTATGCGCGCCAGTTATACGGGCATGTCTAT 30143 |||||| |||||| | || |||||||||||| | || |||||||| || |||| |||| Sbjct 141633 GAAATGGATGACACAACAGGGCGCTGGAGTTATACCCGTCAGTTATATGGTCATGCCTAT 141574 Query 30144 ACCGCAAAACTGGGAACGCTGTCAGAGCTGGTTAATGCCGGAGATATGCATAATCAGCAA 30203 ||||| ||| || | || || || || | || |||| ||| | ||| Sbjct 141573 ACCGCGAAAAAAGGCGATTTATCCGAACTAGTAGAATTTGGTGATAAATTAAATTACCAA 141514 Query 30204 CATATCACGCTTGCCGGTTACGAAAAAGAAACCCAGTCGCCTGTCGATGAACTGGTTGCC 30263 ||||| ||| |||| ||||| |||||| | || | | | |||||| | ||||| Sbjct 141513 CATATTACGGTTGCTGGTTATGAAAAAACCATTCAAACAAGTATTGATGAATTAGTTGCA 141454 Query 30264 AGTCGCCTTGCCCGTGAAGCGGTATTTATCCGCAATGACCCGGCCCGTCCGACACAGACG 30323 | || || || | ||| | ||||| || || || || || || || || || ||| Sbjct 141453 ATGCGAACAGCGCGGAATGCGATTTTTATTCGTAACGATCCAGCTCGCCCAACCCAAACG 141394 Query 30324 GGGGAACTGG-TGGGG-ATGCTTCCGGCACCGAAAGGTAAGCGATTCATCATGACAGAGC 30381 || | | ||||| || | || ||| | | || | | ||| | | | ||||||| Sbjct 141393 GGATTATTAAATGGGGCAT--TACCCGCATCTGATAGTGAACAATTTACCCTAACAGAGC 141336 Query 30382 AGCAGACCCTT--TTATCTCACGGCGTGGCGACGGCTTATGTGGAAGGCGGCACGTTGCG 30439 | || | |||| ||| ||||||| | || || | || || | |||| | || Sbjct 141335 AACA-ATCCTTACTTAG-TCACGGCATAGCCACCACCTACGTTTCAAGCGGTAATTTATT 141278 Query 30440 GATCCAGCGTTCCGTAACCACATACAAAAAGAATGCATATGGCGTGGCAGACAACAGCTA 30499 ||| || ||| | || || || || || ||||| | || || || || || Sbjct 141277 GATACAACGTGATATCACAACTTATCAACGTAACAGTTATGGTATCGCTGATAATAGTTA 141218 Query 30500 TCTGGACAGTGAAACACTGCATACCAGCGCATATGTTCTTCGCAAACTGAAATCG-GTCA 30558 | |||| ||||||||||| ||||| || |||||| | || ||| | | | | || | Sbjct 141217 TTTGGATAGTGAAACACTTCATACGCTGGCTTATGTTTTACGTAAATT-ACGTAGTGTGA 141159 Query 30559 TCACAAGCAAGTACGGACGCCACAAGCTGGCAAATGATGGTACCCGTTTTGGTCCTGGGC 30618 | ||| || ||| ||| || || ||||| |||||||| || || |||||| | || | Sbjct 141158 TTACATCAAAATACCCACGGCATAAACTGGCCAATGATGGCACGCGATTTGGTGCAGGAC 141099 Query 30619 AGGCGATTGTTACTCCTGCCGTTATCAAAGGGGAGCTTCTGGCGACATATCGTCAGATGG 30678 |||| ||| | || ||||||||| || | || | || || ||||| || | | Sbjct 141098 AGGCAATTATCACACCTGCCGTTGCTAAGGCTGAAATCAACGCCACCTATCGACAATTAG 141039 Query 30679 AGCGTGCCGGTATTGTGGAAAATTACGATCTGTTTAAACAGTATCTGATAGTTGAGCGTG 30738 | || | || ||||||| || ||||| ||| || | | || ||||| || Sbjct 141038 AATTACAAGGCTTGGTAGAAAATTTTGAACTGTTCAAAAAGAACTTAATTGTTGAACGAA 140979 Query 30739 ATGCGGATAACCCGAACCGACTGAACACGCTGTTCCCGCCGGATTATGTTAACCAGTTAC 30798 | | | || || ||| | | | ||||| || |||| ||||| || |||| Sbjct 140978 ACATCAACGATCCAAATCGATTAGATGTTTTATTCCCACCAGATTTAGTTAATCAATTAC 140919 Query 30799 GTGTCTTTGCGGTGGNNNNNNNNNNNNNNCTCCAGTATTCAGAGGAGTCAGCATAATGGC 30858 |||| ||||| ||| | || ||| |||||||| | ||||| | Sbjct 140918 GTGTTTTTGCTGTGCTAGCACAGTTTAGATTGCAATATCCAGAGGAGAAAAACTAATGAC 140859 Query 30859 AAAG------ATCGCCGGAACCTGtttttttAAAGTGGATGGTCAGCAGTTATCGCTGAC 30912 ||| || || ||||| || ||||||| |||| | | || | || || || Sbjct 140858 AAAACGACGTATTGCAGGAACAACTTACATTAAAGTCGATGCTAACCAACTGTCACTTAC 140799 Query 30913 AGGTGGCATTGAAGTGCCGATGAACACCAATGTCCGGGATGATGTCGTCGGCATGGCTGG 30972 ||| || |||||||| |||||||| || ||||| || | | | || | | | Sbjct 140798 AGGCGGTATTGAAGTCCCGATGAATACGAATGTTAAAGAGAGTATTATTGGGTTAGATAA 140739 Query 30973 TGATGTGGATTACAAGGAGACCTGGCGGTCACCTTACGTTAAGGGCACGTTTAAAGTGCC 31032 | || | || || || || | || |||| || |||| |||||||||||||| || Sbjct 140738 TAGCGTTCACTATAAAGAAACATTCCGTGCACCCTATATTAAAGGCACGTTTAAAGTACC 140679 Query 31033 CAAAAATTTTCCGGTCGACAAAATTACCGCCTCAGACCAGATGACGATTACTGCCGAGCT 31092 |||||||| |||||||| | | || ||| | ||||| ||||| || || | Sbjct 140678 GGGTGATTTTCCGATCGACAAACTGATGTCCAGTGACAACATGACCATTACCGCAGAATT 140619 Query 31093 GGCAAACGGCATGGTGTATGTGCTTTCGGCGGCCTGGCTGCATGGCGAAGCAAACCATAA 31152 || || || | || || ||| | || || ||| || | || |||| || || || Sbjct 140618 AGCTAATGGTAAAGTTTACGTGTTATCAAATGCATGGGTGGAAGGTGAAGTCAATCACAA 140559 Query 31153 TGCCGAAGAAGGTACGGCAGATCTTGAATTCCACGGCGAAGAGGGAGGATATCAGTAATG 31212 ||| ||||||||||| || || ||||| || || || ||||| ||| ||||| ||||| Sbjct 140558 TGCAGAAGAAGGTACAGCTGAACTTGAGTTTCATGGTGAAGAAGGATTTTATCAATAATG 140499 Query 31213 A 31213 | Sbjct 140498 A 140498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136109414399046