Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq418 170 2e-37 seq1274 118 1e-21 >seq418 Length=3833963 Score = 170 bits (188), Expect = 2e-37 Identities = 222/305 (73%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 37050 AGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTAT 37109 ||||||||||| | | |||| ||| || || || | || ||| | || ||| | Sbjct 2670179 AGAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTTTCAGT 2670120 Query 37110 TAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGT 37169 || |||| |||| || |||||||| || ||||| |||||||| || |||||||||| Sbjct 2670119 CAGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGC 2670060 Query 37170 ATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGA 37229 ||| ||||| || ||||||||||| || || |||||||| | ||| ||||| | ||||| Sbjct 2670059 ATAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGA 2670000 Query 37230 TGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTT 37289 ||| || ||||| || || |||| | |||||| | ||||||| || |||| | | Sbjct 2669999 TGCCGTTGGCATAGGGGCGATTAATAAAGAATTTCTAACTCCATGTTTAGCAATTTTTTC 2669940 Query 37290 TTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGT 37347 ||| || |||| | |||||||| ||||| | | || |||||||||||||||| Sbjct 2669939 TTTCAGAATTGTCCAGTTCCATAAATTAGTTGGAGTAACATT--CCACATATCATATTGT 2669882 Query 37348 AGAAT 37352 | ||| Sbjct 2669881 AAAAT 2669877 Score = 163 bits (180), Expect = 3e-35 Identities = 227/313 (73%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 38083 TTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTAT 38141 || || | ||||||| ||||| | || ||| || || ||||| || ||||||||||||| Sbjct 2668765 TTACCAATATTCTTT-TTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAA 2668707 Query 38142 ATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTT 38201 ||| || | | ||||||||||||||||| ||||| |||| || ||||| | |||| || Sbjct 2668706 ATATATAGCAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATT 2668647 Query 38202 ATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATA 38261 ||| |||| ||| | ||| || | || |||||||||| || | |||| | ||| Sbjct 2668646 ATTGTATACTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGG 2668587 Query 38262 AGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATAT 38321 || || | ||||| ||| | || | ||| || ||||| || || |||| || Sbjct 2668586 TGTGCCTCTTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGC-TGATTTGCTAA 2668528 Query 38322 TAA-AGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTA 38380 ||| || ||| |||||| |||||| | || || ||||| || ||||| | |||| || Sbjct 2668527 TAAGTGCACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTA 2668468 Query 38381 GTATAAAACAACT 38393 ||| ||||||||| Sbjct 2668467 GTAAAAAACAACT 2668455 Score = 113 bits (124), Expect = 4e-20 Identities = 276/414 (67%), Gaps = 17/414 (4%) Strand=Plus/Minus Query 37537 ATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTG 37596 |||||||| || |||||||| ||| ||| | | ||| || ||||||||||| Sbjct 2669505 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCATGAACCGGATAATAATTC 2669446 Query 37597 ATATCTATTATTTTATTTAGATTTTTAACTAGT----ATTTTCGTAATTATTCTCAACTT 37652 | ||| || ||||| | || ||| || ||| ||||| || | | ||| || || Sbjct 2669445 ACATCGATAATTTTGTCTAAATT----ACAAGTAACAATTTTTGTTACTTTTCGCAGTTT 2669390 Query 37653 GTCGAACATAAATACGTTATTA------TTAACAAATTTACTCAACGAAATAGATCCTAG 37706 || || |||| | |||| || ||||| | ||| | || || ||| Sbjct 2669389 TTCAAAATCAAATGTCTGATTACTGGAGTTTACAAACATGTTCACTGCGATTGAAGCTAA 2669330 Query 37707 ATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACT 37766 ||| |||||||| | ||||||| | | |||||| || |||||||| | |||||| Sbjct 2669329 ATTGCATACAGCGATTTCATCTGGACTGGAATATTGTACGATTTCTGTACACAAATTACT 2669270 Query 37767 CGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAG 37826 | | ||||| || ||||| ||||| ||||| ||||||| ||||||||| || Sbjct 2669269 GCTTTTGATTGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATAAAG 2669210 Query 37827 TATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGC 37886 || || || |||||| ||| | ||||| | | ||||| | |||||||| ||| || Sbjct 2669209 CATGTAAGGAGTTCCTGTTTCAACTTGAGAAACAAGAATAGCTGTCCATAAATCTCTCGC 2669150 Query 37887 TTTAA-CGATCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGT 37939 || || | || |||| | |||||| | || || |||| | ||||| ||| Sbjct 2669149 TTGAATCTGACG-TTTATATCTTTTCTCATTCTCATA-TCTAAAAATAATATGT 2669098 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| || ||||||||||| ||||||||| | ||| || ||| | |||| | Sbjct 2670580 TCCAGCCATAAAAATGCATTGAAGTCAGTTTTTCTGTTGTTGGTTTAGCCATATGAACAT 2670521 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||||||| || ||||||||||| ||||| | || |||||||||| ||| || | Sbjct 2670520 TCATTGACTGTGACTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAATATTACCT 2670461 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTA 37033 | || | ||| |||||||| |||||||| | ||||| || || ||||| Sbjct 2670460 TCTGTGGTATTTCCCAAACGGTTTTATAAAGCATTTTTAAATCATTTGGTA 2670410 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 37941 AAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA 38000 ||| |||| ||||| ||||| || || ||| |||| ||||||||||| |||||| Sbjct 2669002 AAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGACCA 2668943 Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAA 38060 | | ||| | || |||| |||||| | |||||||| |||||| ||| ||||| Sbjct 2668942 TACACCATTATCGAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGCATAGAATAA 2668883 Query 38061 ATCTTTGGTTCTATATTCTTCGTTCCCT 38088 ||| | | ||||| |||||| || ||| Sbjct 2668882 TTCTCTTGCTCTATTTTCTTCTTTACCT 2668855 >seq1274 Length=440581 Score = 118 bits (130), Expect = 1e-21 Identities = 171/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 11416 ATTATA-TACATTGA-AGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACG 11473 |||||| ||| || | | || |||||||| ||||| ||||| | ||||||||| || || Sbjct 123679 ATTATAATACTTTTACAAACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACA 123738 Query 11474 AATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCA 11533 ||||| ||||| ||| |||| | ||| ||||| ||||| | | || || | ||| Sbjct 123739 AATTCGATATATTGACACATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCT 123798 Query 11534 ACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCC 11593 | || ||||| || | ||| || || || ||||| | || || || || | || Sbjct 123799 TCCGTTAAAAATTCTTGTTCAATTTTGACGGCATCTTTAATAATTGATGTGACCCGATCG 123858 Query 11594 TTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 ||||||| |||| | |||||| ||||| ||||| || |||||||||||||| || Sbjct 123859 CAAGATGGTTTTTGTACAATATGTTTGAACATCAAACATGCGAAATCACAATGTAATCC 123917 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 11889 TATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAG 11948 ||||| | | ||||||||| || || | ||||||||||| || | |||||| || | Sbjct 124446 TATCTGTGATATATGTATCAATCAACATGGAGTACATTTCTGAGTGCACATTTTCTATGG 124505 Query 11949 CTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTT 12008 | | |||||| ||||||||||| |||||||| | ||||| ||| | ||||| || Sbjct 124506 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCCTGACTAAATCGTT 124565 Query 12009 CCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTA 12068 | | | ||||||||| || || |||||| || ||||| ||||||| | ||| || Sbjct 124566 CGACAAGATTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATA 124625 Query 12069 TAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGA 12120 | || | ||| || || |||| || | || ||| ||| || ||| | ||| Sbjct 124626 TGAAATGTTTCTCATCACTAGTCAAATGATTCCAGTCAAATACATCCTGTGA 124677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468492243382960