Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq418 161 1e-34 seq1274 118 1e-21 >seq418 Length=3833963 Score = 161 bits (178), Expect = 1e-34 Identities = 194/262 (74%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 65094 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 65153 || ||| || ||| ||||| ||| || || || |||| ||| | | ||| || || Sbjct 2670178 GAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTTTCAGTC 2670119 Query 65154 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 65213 | | ||| | | ||| ||||| || |||||||| ||||||||||| ||||| | | Sbjct 2670118 AGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCA 2670059 Query 65214 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 65273 ||||||||||||||||| ||||| | ||| ||||||||||| || ||||| ||||| ||| Sbjct 2670058 TAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGAT 2669999 Query 65274 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTAT 65331 || || |||||||| || | |||||| |||||||| || ||||| | ||||| | Sbjct 2669998 GCCGTTGGCATAGGGGCGATTAATAAAGAATTTCTAACTCC--ATGTTTAGCAATTTTTT 2669941 Query 65332 CTTTTAGAGGTTCCCAATTCCA 65353 |||| ||| | ||| ||||| Sbjct 2669940 CTTTCAGAATTGTCCAGTTCCA 2669919 Score = 140 bits (154), Expect = 4e-28 Identities = 218/307 (71%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 66133 TATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGG 66192 |||||||||||||||| | || | | ||||| |||||| ||||| || ||||| | Sbjct 2668758 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 2668699 Query 66193 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 66252 | | |||| || | ||| |||||||| ||||| | |||| ||| || ||||| || | Sbjct 2668698 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 2668639 Query 66253 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG--CTTCC 66310 |||| | ||||||||| | |||||| ||| |||| || || || ||| | | || Sbjct 2668638 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTGGTGTGCC 2668581 Query 66311 ACTTGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 ||||| |||||| | || | | || || || || || || ||| || | || Sbjct 2668580 TCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTAATAAGTG 2668522 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 | |||| |||||| |||||||| || || ||||| |||||||| |||| | |||| || Sbjct 2668521 CACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAA 2668462 Query 66430 AACAGCT 66436 |||| || Sbjct 2668461 AACAACT 2668455 Score = 129 bits (142), Expect = 8e-25 Identities = 268/392 (68%), Gaps = 14/392 (4%) Strand=Plus/Minus Query 65580 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 65639 ||||| ||||| |||||| | ||| || ||| ||||| ||| ||||||||||| Sbjct 2669505 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCATGAACCGGATAATAATTC 2669446 Query 65640 ATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTG 65696 | ||| |||||||| | | ||| | | |||||| |||| || | |||||| Sbjct 2669445 ACATCGATAATTTTGTCTAAATTACAAGTAACAATT--TTTGTT-ACTTTTCGCAGTTTT 2669389 Query 65697 AGAAAATCAAATCGCTCAT--CTA----TTACAAACATGTTCAATGCAACAGATGCCAGA 65750 |||||||||| || || || ||||||||||||||| ||| | || || | | Sbjct 2669388 TCAAAATCAAATGTCTGATTACTGGAGTTTACAAACATGTTCACTGCGATTGAAGCTAAA 2669329 Query 65751 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 65810 || || || || | |||| | | | |||||||| || || || || | |||||| Sbjct 2669328 TTGCATACAGCGATTTCATCTGGACTGGAATATTGTACGATTTCTGTACACAAATTACTG 2669269 Query 65811 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 65870 | ||||| || ||||||||||| ||||| || ||||| ||| |||||||| Sbjct 2669268 CTTTTGATTGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATAAAGC 2669209 Query 65871 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 65930 ||| | ||||| || ||||||| ||||| | | ||| ||| |||| | ||| | | Sbjct 2669208 ATGTAAGGAGTTCCTGTTTCAACTTGAGAAACAAGAATAGCTGTCCATAAATCTCTCG-C 2669150 Query 65931 TTTATTATAGATTTGTATCTCTTTTCTCTTTC 65962 || | | | || | ||| ||||||||| ||| Sbjct 2669149 TTGAATCT-GACGTTTATATCTTTTCTCATTC 2669119 Score = 102 bits (112), Expect = 1e-16 Identities = 132/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 65968 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 66027 ||||||| | ||| || || || |||||||||| | |||||| |||||| | Sbjct 2669018 GTGTATAGAGAGCTTCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTG 2668959 Query 66028 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 66087 ||||||| || ||||| | || | ||| |||||||||||||| |||||||| |||| Sbjct 2668958 GACACATTAAAGACCATACACCATTATCGAAAACTCGTTTCATAAAAAGATCAGGTATCC 2668899 Query 66088 AAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGT--ATTCTTTTTA 66143 | | ||| ||| ||||| ||||| | ||||| ||| || || ||||| ||| || ||| Sbjct 2668898 ATAAAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 2668841 Score = 100 bits (110), Expect = 4e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 ||||||||||| || | ||||| | ||| ||| | | ||||| || || ||||| Sbjct 2668383 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 2668324 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 66554 | ||| || | | |||||| || || |||||| || ||||| |||||| Sbjct 2668323 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGAATG 2668264 Query 66555 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 66614 | ||||| || | |||||||||||| || ||||||||||| | || | |||||| Sbjct 2668263 GCAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACAACTTTCCCTTGTATTTTT 2668204 Query 66615 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 66674 || || || | |||| | || ||||||||||| || || || |||||||| || Sbjct 2668203 AATAAATAACTTCTTTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAGTCTCTATCA 2668144 Query 66675 TAAATAAT 66682 ||||| || Sbjct 2668143 TAAATTAT 2668136 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 8/174 (5%) Strand=Plus/Minus Query 65415 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 65474 ||| |||| || || |||| |||| || |||| ||||||||||| |||||||||||| Sbjct 2669756 CCTTCATAGGTTTCATATGTACCTTTCTCTGCAGCAAGTTCACAACTAGCCTCTAATGCA 2669697 Query 65475 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 65534 || ||||| | || || || || | |||| || | |||||||||| || ||||| Sbjct 2669696 CCATAATATAATGTCTCAAATATTTGGATATTAAGTTTTTGTGCTTCCTCACTTTCAAAC 2669637 Query 65535 GGATA----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 65584 ||||| ||| || |||| || ||||| | || |||| ||||| || Sbjct 2669636 GGATATCGCATTAAAAGGAAT----GCATCTGCAAGACCCTGAATTCCAATCCC 2669587 >seq1274 Length=440581 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 36417 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 36476 ||||| | | ||||||||||||||| | |||||||| || || | ||||| |||| Sbjct 124446 TATCTGTGATATATGTATCAATCAACATGGAGTACATTTCTGAGTGCACATTTTCTATGG 124505 Query 36477 CCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 36536 | | |||||| || |||||||| | |||||||| | |||||||| || |||||||| Sbjct 124506 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCCTGACTAAATCGTT 124565 Query 36537 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 36596 | | | ||| ||||| || ||||| ||| || ||||| || || || ||||| || Sbjct 124566 CGACAAGATTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATA 124625 Query 36597 TAAAATATTTTTC 36609 | |||| ||| || Sbjct 124626 TGAAATGTTTCTC 124638 Score = 109 bits (120), Expect = 7e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 35954 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATAT 36013 ||| ||| |||| | | || ||||| | || |||||||| || |||||||| |||||| Sbjct 123691 TTACAAACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATAT 123750 Query 36014 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 36073 ||| | | ||| ||||||||||| | || ||| || | ||| | || | |||| Sbjct 123751 TGACACATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCTTCCGTTAAAAAT 123810 Query 36074 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGG--TG 36131 ||||||||||| ||| || ||| | ||||| ||| | || || | || | Sbjct 123811 TCTTGTTCAATTTTGACGGCATCTTTAATAATTGATGTGACCCGATCGCAAGATGGTTTT 123870 Query 36132 GATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 36182 |||||| |||||| |||||||||||||||||||| || |||| |||| Sbjct 123871 TGTACAAT--ATGTTTGAACATCAAACATGCGAAATCACAATGTAATCCCT 123919 Score = 107 bits (118), Expect = 3e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 36701 ||||||| | ||||||||| || || |||||||||||||| || || ||||||||||| | Sbjct 124742 CTTTAGAAAGATCCACTTCCTCAACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 124801 Query 36702 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTTTTGCAAGGA 36761 ||| |||||| | ||||||| ||||| | ||| |||||| | |||||| | || | Sbjct 124802 GCCAAATGTCAGGCCATTGAATAGGAAAGACAACGAATCTACGTGGATTTTCTTTCAGTA 124861 Query 36762 TTGGTTC 36768 |||||| Sbjct 124862 ATGGTTC 124868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658127065217560