Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq916 109 1e-19 >seq916 Length=289624 Score = 109 bits (120), Expect = 1e-19 Identities = 239/358 (67%), Gaps = 0/358 (0%) Strand=Plus/Minus Query 9013 CGTATCGGGGGAACCTGTTATTTCAAAATTGACGGTCAGCAGCTATCGCTGACCGGCGGC 9072 ||||| | ||||| ||| | ||| | || | | | || || || || || ||||| Sbjct 140851 CGTATTGCAGGAACAACTTACATTAAAGTCGATGCTAACCAACTGTCACTTACAGGCGGT 140792 Query 9073 ATTGAGGTGCCCATGAACAGGACGGTCAATGATGACATCATCGGCCTGGACGGTTCAGTG 9132 ||||| || || ||||| | || || || || || || || | || | || Sbjct 140791 ATTGAAGTCCCGATGAATACGAATGTTAAAGAGAGTATTATTGGGTTAGATAATAGCGTT 140732 Query 9133 GACCGCAAGGAAACTCACCGTGCGCCTTATGTCAAAGGGACCTTCAAGGTGCCGAAGAAT 9192 || || ||||| |||||| || ||| | ||||| || || || || ||| || Sbjct 140731 CACTATAAAGAAACATTCCGTGCACCCTATATTAAAGGCACGTTTAAAGTACCGGGTGAT 140672 Query 9193 TTTCCGGTGAGCAAAATCACCTCGTCTGATGAGATGACCATCACTGCCGAGCTGGCGAAC 9252 |||||| | |||| | | || ||| | |||||||| || || || | || || Sbjct 140671 TTTCCGATCGACAAACTGATGTCCAGTGACAACATGACCATTACCGCAGAATTAGCTAAT 140612 Query 9253 GGTCAGGTCTATGTATTGTCGTCAGCCTGGCTGCACGGCGAAGCGAACCATAATGCCGAA 9312 ||| | || || || || || || ||| || | || |||| || || ||||| ||| Sbjct 140611 GGTAAAGTTTACGTGTTATCAAATGCATGGGTGGAAGGTGAAGTCAATCACAATGCAGAA 140552 Query 9313 GAAGGTACGGTTGATCTTGAGTTCCACGGTGAAGAAGGGGATTACCAGTAATGAAAGA 9370 |||||||| | ||| |||||||| || ||||||||||| ||| || |||||||||| Sbjct 140551 GAAGGTACAGCTGAACTTGAGTTTCATGGTGAAGAAGGATTTTATCAATAATGAAAGA 140494 Score = 96.9 bits (106), Expect = 8e-16 Identities = 119/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 16620 AAACTCTGCCCGTCGCATACCTACGTAATTTTTAAATATCCGGAGTAATCCATGCATCGT 16679 ||| | |||||||| ||||| | |||||||||||| || ||||||||| |||||| | Sbjct 149437 AAATTATGCCCGTCTCATACTAATGTAATTTTTAAACAT--GGAGTAATCAATGCATAGA 149380 Query 16680 ATAGACACGAAAACCGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGT 16739 || ||||| ||||| || || ||||| || || | |||||| || || || || Sbjct 149379 ATTGACACACCTACCGCCCAAAAAGATAAATTTGGTGAGGGTAAAAATGGCTTCACAAAA 149320 Query 16740 GGTAACCCCCAGACAGGCACGCCTGCCACCGATCTGGATGAT 16781 || ||||| || || || ||||| || ||| | || ||| || Sbjct 149319 GGCAACCCACAAACTGGTACGCCGGCAACCCAACTTGATTAT 149278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118507376441288