Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq739 109 5e-19 seq129 95.1 1e-14 seq1274 93.3 4e-14 seq503 87.8 2e-12 >seq739 Length=1399493 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| ||||| || | ||| |||||||| |||||||||||||| | || || || Sbjct 7016 CAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATC 6957 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||||| |||||| |||||| ||| ||||| || ||||| || ||||||||||| Sbjct 6956 TTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTGTC 6897 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || ||| | | || | |||||| | | || || |||| || | || Sbjct 6896 TTGGATCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGT 6837 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || || || ||||| || ||||| Sbjct 6836 TTTCCCTGTTAAGGTCTTAACGAAGATCTGCAT 6804 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| ||||| || | ||| |||||||| |||||||||||||| | || || || Sbjct 7244 CAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATC 7185 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| || ||||| |||||| |||||| ||| ||||| || ||||| || || |||||||| Sbjct 7184 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7125 Query 139672 GGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| |||| | ||| | | || | |||||| | | || || || | ||| | | Sbjct 7124 -CTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTAATGG 7066 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || || | |||||||| || || ||||| Sbjct 7065 TTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7032 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| ||||| || | || |||||||| || ||||||||||| | || || || Sbjct 8186 CAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATC 8127 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||||| |||||| |||||| ||| ||||| || ||||| || || |||||||| Sbjct 8126 TTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 8067 Query 139672 GGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| |||| | ||| | | || | |||||| | | || || || | ||| | | Sbjct 8066 -CTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTGATGG 8008 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || || | |||||||| || || ||||| Sbjct 8007 TTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7974 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| ||||| || | ||| |||||||| |||||||||||||| | || || || Sbjct 7472 CAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATC 7413 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| || ||||| |||||| |||||| ||| ||||| || ||||| || || |||||||| Sbjct 7412 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7353 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || || | | || | |||||| | | || || || | ||| | || Sbjct 7352 TTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGT 7293 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || | ||||| || || || ||||| Sbjct 7292 TTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7260 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| ||||| || | ||| |||||||| || ||||||||||| | || || || Sbjct 7700 CAATACTAAATGGAGCGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATC 7641 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| || ||||| |||||| |||||| ||| ||||| || ||||| || || |||||||| Sbjct 7640 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7581 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || || | | || | |||||| | | || || || | ||| | || Sbjct 7580 TTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGT 7521 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || | ||||| || || || ||||| Sbjct 7520 TTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7488 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| ||||| || | || |||||||| || ||||||||||| | || || || Sbjct 7928 CAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATC 7869 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| || ||||| |||||| |||||| ||| ||||| || ||||| || || |||||||| Sbjct 7868 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7809 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || || | | || | |||||| | | || || || | ||| | || Sbjct 7808 TTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGT 7749 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || | ||||| || || || ||||| Sbjct 7748 TTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7716 >seq129 Length=1828789 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 139575 CTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 |||||||||| |||||||| || || | || | ||||| | || || |||||| | Sbjct 1158785 CTTTTTGAATATTATAATCTGACAGAGTACGTCCA-TCTTCCAATTGCTTTCCAGCAAAA 1158727 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT 139693 || |||||||||||||| || || || |||||||| || |||||| ||||| | | Sbjct 1158726 ATAAGACGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTT 1158667 Query 139694 TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 || | || || | | || || |||| ||| | || || || ||||| ||||| || Sbjct 1158666 TCAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACA 1158607 Query 139754 AATATTTGCAT 139764 ||||| ||||| Sbjct 1158606 AATATCTGCAT 1158596 >seq1274 Length=440581 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 52521 AGACTTGATACTCAACGCTTTTGACAATGTTCCGTGTGT-GCGCAAAAAGGATGATTGGG 52579 |||||| | |||| || |||| ||| | || || || ||| |||||| | | |||| Sbjct 124342 AGACTTTCTGTTCAATGCGATTGAAAATTTACCATGCGTTGCGAAAAAAGC-TAACTGGG 124284 Query 52580 CATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTA 52639 |||| || ||||| | | || | ||||| ||| | |||||| |||| || |||||| Sbjct 124283 CATTAAATTGGATAAATCATGAGAGTGCCACATTTCCTGAACGTGTGGTTGCATTTGCTG 124224 Query 52640 TAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGG 52699 |||||||||| | || ||| ||||||||||| || || || | | |||| | Sbjct 124223 CAGTGGAAGGTATTTTCTTTAGCGGTAGTTTTGCCGCTATTTTCTGGCTGAAAAAAAGAG 124164 Query 52700 GCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATC 52739 | ||||||| || || || ||||| || ||| | || || Sbjct 124163 GTTTAATGCCAGGACTTACATTTAGTAATGAGCTTATTTC 124124 >seq503 Length=216272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 139536 GGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGC 139595 |||| || || | || | ||| | |||| || ||||| |||||||| ||||| ||| Sbjct 162784 GGCCACCACGAAGGCGAAGAACAAGATGAAGAGTTGACTCCTTTTGAATATTATAGTCGG 162725 Query 139596 TCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || |||| ||| || | ||||||||||| |||||| | || |||||||| | Sbjct 162724 ACAGCGTGCGACCGTCCTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTG 162665 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | || |||||||| || ||| | || | || | | ||| | ||||| | | |||| Sbjct 162664 GAATACCTTCTTTATC-CTGAATCTTGGCCTTGACATTTTCGATAGTGTCTGAAGCCTCC 162606 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || | ||| || || || | |||||||| || |||||||| Sbjct 162605 ACTTCTAGAGTTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTGCAT 162556 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||| || || ||||| | ||||| | ||||| || || || ||| Sbjct 162288 GTTGATTCCTTTTGTATATTGTAATCAGAGAGTGTGCGCCCATCTTCAAGTTGCTTTCCA 162229 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||||| | ||| || || ||||| || ||||||||||| ||| |||||| ||| Sbjct 162228 GCAAAGATCAATCTTTGTTGGTCTGGAGGAATTCCTTCTTTGTC-TTGAATTTTTGCTTT 162170 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | ||| | || |||| | || || |||| || | || || || || | || Sbjct 162169 TACATTTTCTATCGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTAAGGGT 162110 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| ||||||||| Sbjct 162109 CTTCACGAAAATTTGCATA 162091 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| || || ||||||||||| ||||| || || |||| |||||| Sbjct 162073 AACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTC 162014 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||||||||||| |||||| | || ||||| || || || |||||||| || | Sbjct 162013 CAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATC-CT 161955 Query 139675 GATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | ||| | | ||| | ||||| | | ||| || || | || | ||| | Sbjct 161954 GAATCTTGGCCTTAACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTT 161895 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || || | || || ||||| ||||||||| Sbjct 161894 TTCCTGTAAGGGTCTTGACGAAAATTTGCATA 161863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496029529752800