Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq418 192 8e-44 seq1274 107 3e-18 >seq418 Length=3833963 Score = 192 bits (212), Expect = 8e-44 Identities = 226/304 (74%), Gaps = 4/304 (1%) Strand=Plus/Minus Query 78973 GATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTT 79032 || ||| || ||| ||||| ||| || || || |||| ||| | | ||| || || Sbjct 2670178 GAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTTTCAGTC 2670119 Query 79033 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 79092 | | ||| | | ||| ||||| || |||||||| ||||||||||| ||||| | | Sbjct 2670118 AGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCA 2670059 Query 79093 TAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGAT 79152 ||||||||||||||||||||||| | |||||||||||||| || ||||| ||||| ||| Sbjct 2670058 TAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGAT 2669999 Query 79153 GCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATTTTAT 79210 |||||||||||||| || | |||||| |||||||| || ||| | | ||||| | Sbjct 2669998 GCCGTTGGCATAGGGGCGATTAATAAAGAATTTCTAACTCC--ATGTTTAGCAATTTTTT 2669941 Query 79211 CTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTA 79270 |||| ||| | ||| | ||| | || || || ||||||||| | ||||||||||| Sbjct 2669940 CTTTCAGAATTGTCCAGTTCCATAAATTAGTTGGAGTAACATTCCACATATCATATTGTA 2669881 Query 79271 GAAT 79274 ||| Sbjct 2669880 AAAT 2669877 Score = 154 bits (170), Expect = 2e-32 Identities = 221/307 (72%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 |||||||||||||||| | || | | ||||| | |||||| ||||| || ||||| | Sbjct 2668758 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 2668699 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | |||| |||| ||| |||||||| ||||| | |||| ||| || ||||| || | Sbjct 2668698 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 2668639 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG--CTTCC 80189 |||| | ||||||||| | |||||| ||| |||| || || || ||| | | || Sbjct 2668638 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTGGTGTGCC 2668581 Query 80190 ACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 || || |||||| | || | | || || || || || || ||| || | || Sbjct 2668580 TCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTAATAAGTG 2668522 Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308 | |||| |||||| |||||||| || || ||||||||||||||| |||| | |||| || Sbjct 2668521 CACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAA 2668462 Query 80309 AACAGCT 80315 |||| || Sbjct 2668461 AACAACT 2668455 Score = 116 bits (128), Expect = 5e-21 Identities = 267/397 (67%), Gaps = 24/397 (6%) Strand=Plus/Minus Query 79459 ATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTA 79518 ||||| ||||| |||||| | ||| || ||| ||||| ||| ||||||||||| Sbjct 2669505 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCATGAACCGGATAATAATTC 2669446 Query 79519 ATATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTT----AG 79571 | ||| |||||||| | | ||| | | || ||| |||| | |||| || Sbjct 2669445 ACATCGATAATTTTGTCTAAATTACAAGTAACAATT--TTTGT-----TACTTTTCGCAG 2669393 Query 79572 TTTGAGAAAATCAAATCGTCCATCTA-------TTACAAACATGTTCAACGCGACAGATG 79624 ||| |||||||||| ||| || ||||||||||||||| |||| || | Sbjct 2669392 TTTTTCAAAATCAAAT-GTCTGATTACTGGAGTTTACAAACATGTTCACTGCGATTGAAG 2669334 Query 79625 CCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGT 79684 | | ||| || || || | |||| | | | |||||||| ||||| || || | | Sbjct 2669333 CTAAATTGCATACAGCGATTTCATCTGGACTGGAATATTGTACGATTTCTGTACACAAAT 2669274 Query 79685 TACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 79744 |||| | || || || ||||||||||| ||||| || ||||| ||| |||| Sbjct 2669273 TACTGCTTTTGATTGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTAT 2669214 Query 79745 AAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 79804 |||| ||| | ||||| || ||||||| ||||| | | ||| ||| |||| | ||| Sbjct 2669213 AAAGCATGTAAGGAGTTCCTGTTTCAACTTGAGAAACAAGAATAGCTGTCCATAAATCTC 2669154 Query 79805 GAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTC 79841 | ||| | | | ||| | ||| ||||||||| ||| Sbjct 2669153 TCG-CTTGAATCT-GACGTTTATATCTTTTCTCATTC 2669119 Score = 109 bits (120), Expect = 8e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| ||| |||||||| || || ||||| |||| || ||||| || ||||| | Sbjct 2667926 CACTAAAGCTTTTCTTTGTTTCTTTATGAAGATTAGATATTGCAATTCTTGCAGCTAATA 2667867 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | |||||||||||||||| ||||| ||| || || |||| ||||| ||| |||| | Sbjct 2667866 TCGCATAATCTGGATGTTTAGTAGTCATAGTTGCAGCAGTTTCAGCTGCAAGATTGTCTA 2667807 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 80837 |||| || || ||||| || ||||| || |||||| Sbjct 2667806 ATTCAACGGTGGTTACACCTGAATATAAACCACTGATAAC 2667767 Score = 102 bits (112), Expect = 1e-16 Identities = 132/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 79847 GTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAG 79906 ||||||| | ||| || || || ||||||||||| || |||||| |||| | | Sbjct 2669018 GTGTATAGAGAGCTTCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTG 2668959 Query 79907 GACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCC 79966 ||||||| || ||||| | |||| ||| |||||||||||||| |||||||| |||| Sbjct 2668958 GACACATTAAAGACCATACACCATTATCGAAAACTCGTTTCATAAAAAGATCAGGTATCC 2668899 Query 79967 AAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT--ATTCTTTTTA 80022 | | ||| ||| |||| ||||| | ||||| || || || ||||| ||| || ||| Sbjct 2668898 ATAAAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 2668841 Score = 100 bits (110), Expect = 4e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 ||||||||||| || | ||||| | ||| ||| | | ||||| || || ||||| Sbjct 2668383 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 2668324 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 | ||| || | | |||||| || || |||||| || ||||| |||||| Sbjct 2668323 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGAATG 2668264 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 | || || || | |||||||||||| || ||||||||||| | || | |||||| Sbjct 2668263 GCAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACAACTTTCCCTTGTATTTTT 2668204 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 80553 || || ||| | |||| | || ||||||||||| || || || |||||||| || Sbjct 2668203 AATAAATAACTTCTTTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAGTCTCTATCA 2668144 Query 80554 TAAATAAT 80561 ||||| || Sbjct 2668143 TAAATTAT 2668136 >seq1274 Length=440581 Score = 107 bits (118), Expect = 3e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 49756 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATAT 49815 ||| ||| |||| | | || ||||| | || |||||||| || |||||||| |||||| Sbjct 123691 TTACAAACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATAT 123750 Query 49816 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAAT 49875 ||| | | ||| ||||||||||| | || ||| || | ||| | || | |||| Sbjct 123751 TGACACATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCTTCCGTTAAAAAT 123810 Query 49876 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGA 49935 ||||||||||| || |||||| | ||||| ||| | || || | ||| Sbjct 123811 TCTTGTTCAATTTTGACGGCATCTTTAATAATTGATGTGACCCGATCGCAAGATGGTTTT 123870 Query 49936 TGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 49984 || | | |||||| |||||||||||||||||||| || || | |||| Sbjct 123871 TGTACAATATGTTTGAACATCAAACATGCGAAATCACAATGTAATCCCT 123919 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 ||||||| | ||| ||||| || || |||||||||||||| || || ||||||||||| | Sbjct 124742 CTTTAGAAAGATCCACTTCCTCAACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 124801 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||| |||||| | |||| || || || | ||| |||||| ||||||| Sbjct 124802 GCCAAATGTCAGGCCATTGAATAGGAAAGACAACGAATCTACGTGGATTT 124851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718218889296760