Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1274 98.7 1e-15 >seq1274 Length=440581 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733 || || ||||| |||| |||| |||||||||||||||| ||| || ||||||||| || Sbjct 123697 ACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATATTGACAC 123756 Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793 || | ||| ||||| ||||| | || ||||| | | ||||||||||||| | Sbjct 123757 ATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCTTCCGTTAAAAATTCTTGT 123816 Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTT 13853 || || || || |||| ||||||||| | | | || ||| || | || | Sbjct 123817 TCAATTTTGACGGCATCTT---TAATAATTGATGTGACCCGATCGCAAGATGGTTTTTGT 123873 Query 13854 ---AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896 | |||||| || || ||||| || ||||||||||| | |||| Sbjct 123874 ACAATATGTTTGAACATCAAACATGCGAAATCACAATGTAATCCCT 123919 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 14125 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 ||||||| || || || ||||||||||| | | | |||||||| ||||| | | Sbjct 124437 TCTCTTTGATATCTGTGATATATGTATCAATCAACATGGAGTACATTTCTGAGTGCACAT 124496 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAG 14243 |||| || || | ||||||||||| || || | || || | |||||||||| || Sbjct 124497 TTTCTATGGCGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCCTGAC 124556 Query 14244 TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAA 14302 | ||||| |||| | | ||| |||||||| || |||||| ||| ||||| ||||| || Sbjct 124557 T-AAATCGTTCGACAAGATTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAA 124614 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||| |||||| || || |||||| | ||||||||| || |||| ||||| Sbjct 124113 CCTCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTTTTT 124172 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| || || || ||||| ||| |||||| || || || ||||||||||| | Sbjct 124173 TCAGCCAGAAAATAGCGGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAAATG 124232 Query 14014 C 14014 | Sbjct 124233 C 124233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479694664900600