Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1274 95.1 1e-14 >seq1274 Length=440581 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/180 (73%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 13913 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 13972 ||||||| || || || ||||||||||| | | | |||||||| ||||| | | Sbjct 124437 TCTCTTTGATATCTGTGATATATGTATCAATCAACATGGAGTACATTTCTGAGTGCACAT 124496 Query 13973 TTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC-GAG 14031 ||||||| || | ||||||||||| ||||| | || || | |||||| ||| || Sbjct 124497 TTTCTATGGCGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCCTGAC 124556 Query 14032 TAAAATCTTTCTGCCAAG-TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAA 14090 | ||||| ||| | |||| || |||||||| || |||||| ||| ||||| ||||| || Sbjct 124557 T-AAATCGTTC-GACAAGATTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAA 124614 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||| |||||| || || |||||| | ||||||||| || |||| ||||| Sbjct 124113 CCTCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTTTTT 124172 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| || || || || || ||| |||||| || || || ||||||||||| | Sbjct 124173 TCAGCCAGAAAATAGCGGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAAATG 124232 Query 13802 C 13802 | Sbjct 124233 C 124233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478555544060760