Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq503 136 3e-27 seq2682 123 2e-23 >seq503 Length=216272 Score = 136 bits (150), Expect = 3e-27 Identities = 179/244 (73%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 42869 ATATCCAATCGTCG-CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGC 42927 |||| |||| ||| || ||||| || | | || | ||| | ||| ||||||||| Sbjct 162797 ATATTAAATCATCGGCCACCACGAAGGCGAAGAACAAGATGAAGAGTTGACTCCTTTTGA 162738 Query 42928 ACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGC 42987 | ||| || ||||||| || || |||| ||||||||||| || || || ||||||| | Sbjct 162737 ATATTATAGTCGGACAGCGTGCGACCGTCCTCCAATTGTTTACCAGCGAAGATCAATCTC 162678 Query 42988 TGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGT 43046 |||||||||| || | ||||||||| || ||| ||| | ||||| | | | || Sbjct 162677 TGTTGATCGGGTGGAATACCTTCTTTATC-CTGAATCTTGGCCTTGACATTTTCGATAGT 162619 Query 43047 GTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTG 43106 ||| |||||| || |||| ||||| ||||| || || || ||||| ||||||||||| Sbjct 162618 GTCTGAAGCCTCCACTTCTAGAGTTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTG 162559 Query 43107 CATT 43110 |||| Sbjct 162558 CATT 162555 Score = 129 bits (142), Expect = 4e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||| || || |||| || ||| |||| ||||||||||| || || || Sbjct 161826 TCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAG 161767 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCT 43037 ||||||| ||||||||| | ||| | ||||||||| || |||| || | ||||| | Sbjct 161766 ATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATC-CTGAATCTTGGCCTTGACATT 161708 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| |||||| || || | ||||| |||||||| || || ||||| || Sbjct 161707 TTCAATAGTGTCTGAAGCCTCAACTTCCAGAGTTATCGTTTTTCCTGTAAGGGTTTTTAC 161648 Query 43098 AAAAATTTGCATT 43110 ||||||||||||| Sbjct 161647 AAAAATTTGCATT 161635 Score = 125 bits (138), Expect = 5e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||| || || |||| || ||| |||| ||||||||||| || || || Sbjct 160843 TCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAG 160784 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCT 43037 ||||||| ||||||||||| || | ||||||||| || |||| || | ||||| | Sbjct 160783 ATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATC-CTGAATCTTGGCCTTGACATT 160725 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| ||||| || |||| ||||| |||||||| || || || || || Sbjct 160724 TTCAATAGTGTCTGATGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGAC 160665 Query 43098 AAAAATTTGCATT 43110 |||||||||||| Sbjct 160664 GAAAATTTGCATT 160652 Score = 120 bits (132), Expect = 2e-22 Identities = 149/201 (74%), Gaps = 10/201 (5%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||| || | ||| ||| | || |||| |||||| || |||||| Sbjct 162518 TCCTTCTGAATATTGTAATCTGATAGTGTGCGTCCATCTTCCAGTTGTTTACCCGCAAAA 162459 Query 42979 ATCAATCGCTGTTGAT-CGGC-------CGGCACACCTTCTTTTTCGCTG-ATCAACTCT 43029 ||||||| |||||||| |||| ||| | ||||||||| || ||| ||| | Sbjct 162458 ATCAATCTCTGTTGATCCGGCGATCTGGCGGAATACCTTCTTTATC-CTGAATCTTGGCC 162400 Query 43030 TTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGA 43089 ||||| | | | ||||| |||||| || |||| ||||| ||||| || || || Sbjct 162399 TTGACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGAGTTATCGTTTTCCCAGTAAGG 162340 Query 43090 GTTTTCACAAAAATTTGCATT 43110 ||||| ||||||||||||||| Sbjct 162339 GTTTTTACAAAAATTTGCATT 162319 Score = 118 bits (130), Expect = 8e-22 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||| || || |||| || ||| |||| ||||||||||| || || || Sbjct 162054 TCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAG 161995 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 ||||||| ||||||||| | ||| | ||||||||| || ||| ||| | || || | Sbjct 161994 ATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATC-CTGAATCTTGGCCTTAACATT 161936 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| |||||| || |||| ||||| |||||||| || || || || || Sbjct 161935 TTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGAC 161876 Query 43098 AAAAATTTGCAT 43109 ||||||||||| Sbjct 161875 GAAAATTTGCAT 161864 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||||| || | ||| ||| | || |||| |||||| || |||||| Sbjct 161071 TCCTTCTGAATGTTGTAATCTGATAGTGTGCGTCCATCTTCCAGTTGTTTACCCGCAAAA 161012 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||| ||||||||| | ||| | ||||| || || || |||| || | Sbjct 161011 ATCAATCTCTGTTGATCTGGCGGAATTCCTTCCTTATCTTGAATTTTTGCTTTTACATTT 160952 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | |||||| ||| || || || | || ||||||||||| || || || ||||| Sbjct 160951 TCTATCGTGTCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACG 160892 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 160891 AAAATTTGCAT 160881 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||||||||| || | ||| || | || ||||||||||| || ||||| Sbjct 160615 TCCTTTTGTATATTGTAATCAGAAAGTGTGCGCCCATCTTCCAATTGTTTACCAGCAAAG 160556 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| | |||||| || | || | ||||||||| || ||| |||| || | Sbjct 160555 ATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTATCTTGAATCTTTGCTTTCACGTTC 160496 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||| ||| ||| || || || | || ||||||||||| || || || || || Sbjct 160495 TCAATTGTATCGGAAGCTTCAACTTCAAGGGTGATAGTTTTTCCTGTCAGTGTCTTGACG 160436 Query 43099 AAAATTTGCAT 43109 || || ||||| Sbjct 160435 AAGATCTGCAT 160425 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||||||||| || | ||| || | || || | ||| || || ||||| Sbjct 162282 TCCTTTTGTATATTGTAATCAGAGAGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAG 162223 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||| ||||| || | || | |||||||| || || |||| || | Sbjct 162222 ATCAATCTTTGTTGGTCTGGAGGAATTCCTTCTTTGTCTTGAATTTTTGCTTTTACATTT 162163 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | || ||| ||| || || || | || ||||||||||| || || || ||||| Sbjct 162162 TCTATCGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACG 162103 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 162102 AAAATTTGCAT 162092 >seq2682 Length=416 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||| || || |||| || ||| |||| ||||||||||| || || || Sbjct 130 TCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAG 189 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 |||| || ||||||||||| || | ||||||||| || ||| ||| | ||||| | Sbjct 190 ATCACTCTCTGTTGATCGGGTGGAATACCTTCTTTATC-CTGAATCTTGGCCTTGACATT 248 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| |||||| || |||| ||||| |||||||| || || || || || Sbjct 249 TTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGAC 308 Query 43098 AAAAATTTGCAT 43109 ||||||||||| Sbjct 309 GAAAATTTGCAT 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381343762090422