Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq418 163 4e-35 seq1274 118 1e-21 >seq418 Length=3833963 Score = 163 bits (180), Expect = 4e-35 Identities = 192/260 (74%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 71056 GATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTT 71115 || ||| || ||| ||||| |||||| || || |||| ||| | | ||| || || Sbjct 2670178 GAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTTTCAGTC 2670119 Query 71116 AAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTG 71175 | | ||| | | ||||||||| || |||||||| ||||||||||| ||||| | | Sbjct 2670118 AGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCA 2670059 Query 71176 TAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 71235 ||||||||||||||||| ||||| | || ||||||||||| || ||||| ||||| ||| Sbjct 2670058 TAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGAT 2669999 Query 71236 GCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCT 71295 || || |||||||| || | |||| | |||||||| |||||| ||||| ||| Sbjct 2669998 GCCGTTGGCATAGGGGCGATTAATAAAGAATTTCTAACTCCATGTTTAGCAATTTTTTCT 2669939 Query 71296 TTTAGAGATTCCCAATTCCA 71315 || ||| | ||| ||||| Sbjct 2669938 TTCAGAATTGTCCAGTTCCA 2669919 Score = 143 bits (158), Expect = 4e-29 Identities = 219/308 (71%), Gaps = 8/308 (3%) Strand=Plus/Minus Query 72095 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 72154 |||||||||||||||| | || | | ||||| | |||||| ||||| || ||||| | Sbjct 2668758 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 2668699 Query 72155 CCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 72214 | | |||| || | ||| |||||||| ||||| | |||| ||| || ||||| || | Sbjct 2668698 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 2668639 Query 72215 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG--CTTCC 72272 |||| | ||||||||| | |||||| ||| ||||| || || || ||| | | || Sbjct 2668638 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTGGTGTGCC 2668581 Query 72273 ACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330 || || ||||| | || ||| || || || || || || ||| || | | Sbjct 2668580 TCTTGCTCGAATACAATGTACATT--AAGTCCAATACCACCAGCTGATTTGCTAATAAGT 2668523 Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 || |||| |||||| |||||||| || || ||||| |||||||| |||| | |||| | Sbjct 2668522 GCACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAA 2668463 Query 72391 AAACAGCT 72398 ||||| || Sbjct 2668462 AAACAACT 2668455 Score = 111 bits (122), Expect = 2e-19 Identities = 237/351 (68%), Gaps = 20/351 (6%) Strand=Plus/Minus Query 71542 ATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTA 71601 ||||| ||||| || ||| | ||| || ||| ||||| ||| ||||||||||| Sbjct 2669505 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCATGAACCGGATAATAATTC 2669446 Query 71602 ATATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTT----AG 71654 | ||| |||||||| | | ||| | | || ||| |||| | |||| || Sbjct 2669445 ACATCGATAATTTTGTCTAAATTACAAGTAACAATT--TTTGT-----TACTTTTCGCAG 2669393 Query 71655 TTTGAGAAAATCAAATCTCCCAT--CTA----TTACAAACACGTTCAAGGCAACAGATGC 71708 ||| |||||||||| || || || ||||||||| ||||| || | || || Sbjct 2669392 TTTTTCAAAATCAAATGTCTGATTACTGGAGTTTACAAACATGTTCACTGCGATTGAAGC 2669333 Query 71709 CAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATT 71768 | ||| || || || | |||| | | || |||||||| ||||| || || | ||| Sbjct 2669332 TAAATTGCATACAGCGATTTCATCTGGACTGGAATATTGTACGATTTCTGTACACAAATT 2669273 Query 71769 ACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 71828 ||| | ||||| || ||||||||||| ||||| || ||||| ||| ||||| Sbjct 2669272 ACTGCTTTTGATTGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATA 2669213 Query 71829 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 71879 ||| || | ||||| || ||||||| ||||| | | ||| ||| |||| Sbjct 2669212 AAGCATGTAAGGAGTTCCTGTTTCAACTTGAGAAACAAGAATAGCTGTCCA 2669162 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| ||| |||||||| || || ||||| |||| || ||||| || |||| | Sbjct 2667926 CACTAAAGCTTTTCTTTGTTTCTTTATGAAGATTAGATATTGCAATTCTTGCAGCTAATA 2667867 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | |||||||||||||||| ||||| ||| || || |||| ||||| ||| |||| | Sbjct 2667866 TCGCATAATCTGGATGTTTAGTAGTCATAGTTGCAGCAGTTTCAGCTGCAAGATTGTCTA 2667807 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 72920 |||| || || ||||| || ||||| || |||||| Sbjct 2667806 ATTCAACGGTGGTTACACCTGAATATAAACCACTGATAAC 2667767 Score = 96.9 bits (106), Expect = 5e-15 Identities = 131/179 (73%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 71930 GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCG 71989 ||||||| | ||| || || || |||||| ||| || |||||| |||||| | Sbjct 2669018 GTGTATAGAGAGCTTCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTG 2668959 Query 71990 GACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCC 72049 ||||||| || ||||| | |||| ||| |||||||||||||| |||||||| |||| Sbjct 2668958 GACACATTAAAGACCATACACCATTATCGAAAACTCGTTTCATAAAAAGATCAGGTATCC 2668899 Query 72050 AAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT--ATTCTTTTTA 72105 | | ||| ||| |||| ||||| | ||||| || || || ||||| ||| || ||| Sbjct 2668898 ATAAAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 2668841 Score = 91.5 bits (100), Expect = 2e-13 Identities = 179/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||||||||| || | ||||| | ||| ||| | | ||||| || || ||||| Sbjct 2668383 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 2668324 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 | ||| || | | |||||| || || |||||| || ||||| ||| || Sbjct 2668323 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGAATG 2668264 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 | || || || | ||||||||| || || ||||||||||| | || | |||||| Sbjct 2668263 GCAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACAACTTTCCCTTGTATTTTT 2668204 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 72636 || || || | |||| | || ||||||||||| || || || |||||||| || Sbjct 2668203 AATAAATAACTTCTTTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAGTCTCTATCA 2668144 Query 72637 TAAATAATAACCGAATTGAGTTTAT 72661 ||||| || | ||||| | |||| Sbjct 2668143 TAAATTATTGCAGAATTTAACTTAT 2668119 >seq1274 Length=440581 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42324 TATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGG 42383 ||||| | | ||||||||| ||||| | ||||||||||| || | ||||| |||| Sbjct 124446 TATCTGTGATATATGTATCAATCAACATGGAGTACATTTCTGAGTGCACATTTTCTATGG 124505 Query 42384 CCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTT 42443 | | ||||| || |||||||| | |||||||| || |||||||| || |||||||| Sbjct 124506 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCCTGACTAAATCGTT 124565 Query 42444 CAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 42503 | | | ||| || || || ||||| ||| || ||||| || || || ||||| || Sbjct 124566 CGACAAGATTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATA 124625 Query 42504 TAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCA 42541 | |||| ||| || || || || | |||||| ||| Sbjct 124626 TGAAATGTTTCTCATCACTAGTCAAATGATTCCAGTCA 124663 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 ||||||| | ||| ||||| || || ||||||||||||||||| || ||||||||||| | Sbjct 124742 CTTTAGAAAGATCCACTTCCTCAACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 124801 Query 42609 TCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 ||| || ||| | ||||||| || || | ||| |||||| ||||||| Sbjct 124802 GCCAAATGTCAGGCCATTGAATAGGAAAGACAACGAATCTACGTGGATTT 124851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671092564214840