Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq916 253 5e-63 >seq916 Length=289624 Score = 253 bits (280), Expect = 5e-63 Identities = 770/1184 (65%), Gaps = 32/1184 (3%) Strand=Plus/Minus Query 8425 TGAAATGAATGATTCCAGCGGTCGCTGGAGTTATGTCCGGCAGTTGTATGGTCACGTTTA 8484 ||||||| |||| | | || |||||||||||| ||| ||||| |||||||| | || Sbjct 141634 TGAAATGGATGACACAACAGGGCGCTGGAGTTATACCCGTCAGTTATATGGTCATGCCTA 141575 Query 8485 TACGGCGAAGACGGGGACTCTGTCGGAGCTTGTGGCCGCGGGTGACCAGTTTAACCTGCA 8544 ||| ||||| | || | | || || || || | ||||| | || || || Sbjct 141574 TACCGCGAAAAAAGGCGATTTATCCGAACTAGTAGAATTTGGTGATAAATTAAATTACCA 141515 Query 8545 GCACATCACCCTGGCGGGCTATGAGAAAGACACCCAGACGCCTGCTGATGAACTGGCTGC 8604 || || || | || || ||||| ||| || || || | ||||||| | | ||| Sbjct 141514 ACATATTACGGTTGCTGGTTATGAAAAAACCATTCAAACAAGTATTGATGAATTAGTTGC 141455 Query 8605 AAGCCGTACTGCCCGTGCTGCGGTTTTTATCCGTAACGATCCGGCGCGCCCGACCCAGAC 8664 || || || || || |||| ||||||| ||||||||||| || ||||| ||||| || Sbjct 141454 AATGCGAACAGCGCGGAATGCGATTTTTATTCGTAACGATCCAGCTCGCCCAACCCAAAC 141395 Query 8665 CGGGG----AGCTGGTGGACATGCTGCCGGCACCGAAAGGCAAACGTTTCACGACGACTG 8720 || | ||| | ||| | || ||| | | | ||| || || || | Sbjct 141394 GGGATTATTAAATGGGG--CAT--TACCCGCATCTGATAGTGAACAATTTACCCTAACAG 141339 Query 8721 AACAGCAGACGTTACTTTCCCACGGTGTGGCAACGGCGTATGTGGAAAGCGGCGTGCTGC 8780 | || || | |||||| ||||| | || || | || || |||||| | Sbjct 141338 AGCAACAATCCTTACTTAGTCACGGCATAGCCACCACCTACGTTTCAAGCGGTAATTTAT 141279 Query 8781 GTATTCAGCGGGATATCACGACGTA-CA--GGAAAAATGCGTATGGTGTGGCGGATAACA 8837 || || || |||||||| || || || | || | | |||||| | || ||||| | Sbjct 141278 TGATACAACGTGATATCACAACTTATCAACGTAACAGT---TATGGTATCGCTGATAATA 141222 Query 8838 GCTACCTTGACAGCGAGACGCTGCATACCAGTGCTTATGTGTTGCGCCGTCTGAAATCTG 8897 | || | || || || || || ||||| |||||||| || || | || Sbjct 141221 GTTATTTGGATAGTGAAACACTTCATACGCTGGCTTATGTTTTACGTAAATTACGTAGTG 141162 Query 8898 TTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTCTG 8957 | ||||| |||||| || |||||||| || |||||||| ||||| || || | | Sbjct 141161 TGATTACATCAAAATACCCACGGCATAAACTGGCCAATGATGGCACGCGATTTGGTGCAG 141102 Query 8958 GTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAG-CTGGGATCAACA-----TATC 9011 | ||||| ||| |||| ||||||||| | | || ||| |||||| |||| Sbjct 141101 GACAGGCAATTATCACACCTGCCGTT------GCTAAGGCTGAAATCAACGCCACCTATC 141048 Query 9012 GCCAGATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAG 9071 | || | || ||||| | || ||||| || || |||||| | | | | || | Sbjct 141047 GACAATTAGAATTACAAGGCTTGGTAGAAAATTTTGAACTGTTCAAAAAGAACTTAATTG 140988 Query 9072 TGGAGCGTAACGCGAACGATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCA 9131 | || || ||| |||||| | || || | ||||| | || || || |||| || | Sbjct 140987 TTGAACGAAACATCAACGATCCAAATCGATTAGATGTTTTATTCCCACCAGATTTAGTTA 140928 Query 9132 ATCAGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTATAGCGAGGAGGCTG 9191 |||| |||||||| ||||| ||||| ||||| | |||| ||| |||||| Sbjct 140927 ATCAATTACGTGTTTTTGCTGTGCTAGCACAGTTTAGATTGCAATATCCAGAGGAGAAAA 140868 Query 9192 CATAATGGGAAAA------ATTGCGGGAACAACGTATTTCAAAATCGATGGACAGCAACT 9245 ||||| |||| ||||| |||||||| || | ||| |||||| | ||||| Sbjct 140867 ACTAATGACAAAACGACGTATTGCAGGAACAACTTACATTAAAGTCGATGCTAACCAACT 140808 Query 9246 GTCGGTAACCGGAGGGATTGAAGTCCCCATGAACACCAAAGTTCGTGACGACGTGATTGG 9305 ||| | || || || ||||||||||| ||||| || || ||| || | ||||| Sbjct 140807 GTCACTTACAGGCGGTATTGAAGTCCCGATGAATACGAATGTTAAAGAGAGTATTATTGG 140748 Query 9306 CCTGGATGGTTCCGTTGACTACAAGGAAACCAGCCGGGCACCGTATACGAAGGTGACCGC 9365 | ||| | |||| |||| || ||||| ||| ||||| |||| || | || Sbjct 140747 GTTAGATAATAGCGTTCACTATAAAGAAACATTCCGTGCACCCTATATTAAAGGCACGTT 140688 Query 9366 CAAAGTGCCGAAAAACTTCCCGGTCGATAAAATTACGTCTTCTGATGTTATGACCATCAC 9425 ||||| ||| | || ||| |||| ||| | | ||| ||| |||||||| || Sbjct 140687 TAAAGTACCGGGTGATTTTCCGATCGACAAACTGATGTCCAGTGACAACATGACCATTAC 140628 Query 9426 ATCAGAGCTGGCAAATGGTCAGGTGTATGTTCTCTCAAACGCCTGGCTGCACGGCGAAGC 9485 |||| | || |||||| | || || || | ||||| || ||| || | || |||| Sbjct 140627 CGCAGAATTAGCTAATGGTAAAGTTTACGTGTTATCAAATGCATGGGTGGAAGGTGAAGT 140568 Query 9486 CAACCATAACCCGGAAGAGGGCACCGTGGATCTTGAGTTCCACGGTGAGGAGGGATTTTA 9545 ||| || || | ||||| || || | || |||||||| || ||||| || |||||||| Sbjct 140567 CAATCACAATGCAGAAGAAGGTACAGCTGAACTTGAGTTTCATGGTGAAGAAGGATTTTA 140508 Query 9546 CCAGTGATAAAAGAACTTGTGCTCAAAAAGCCGATTATGGCGCA 9589 || | || |||||| || | | ||||||| ||||| || Sbjct 140507 TCAATAATGAAAGAAATTAAATTATCACAGCCGATCATGGCACA 140464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128346726872138