Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq739 147 2e-30 seq503 131 1e-25 seq129 109 4e-19 seq2682 102 6e-17 >seq739 Length=1399493 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || |||||||| || ||||| ||||| || ||||| ||||| ||| |||| | Sbjct 7247 TCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCC 7188 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||||| |||||||||||| | |||||||| || ||||| ||||| || ||||| Sbjct 7187 ATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTT 7128 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| |||||| ||| ||| | ||||| || || ||| || || |||||||| Sbjct 7127 GTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTAAT 7068 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || || || ||||||||||| || ||||| Sbjct 7067 GGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7032 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || |||||||| || ||||| ||||| || ||||| ||||| ||| |||| | Sbjct 7475 TCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCC 7416 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||||| |||||||||||| | |||||||| || ||||| ||||| || ||||| Sbjct 7415 ATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTT 7356 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| || || ||| ||| | ||||| || || | |||||| || |||||||| Sbjct 7355 GTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAAT 7296 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| || || ||||| ||||| || ||||| Sbjct 7295 GGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7260 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || |||||||| || ||||| ||||| || ||||| ||||| ||| |||| | Sbjct 7703 TCTCAATACTAAATGGAGCGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCC 7644 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||||| |||||||||||| | |||||||| || ||||| ||||| || ||||| Sbjct 7643 ATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTT 7584 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| || || ||| ||| | ||||| || || | |||||| || |||||||| Sbjct 7583 GTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAAT 7524 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| || || ||||| ||||| || ||||| Sbjct 7523 GGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7488 Score = 147 bits (162), Expect = 2e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 15130 ATGTCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTA 15189 ||| || || || | | ||| || |||||||| || ||||| ||||| || ||||| || Sbjct 7949 ATGGCTTCCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATA 7890 Query 15190 ATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTC 15249 ||| ||| |||| | ||||||| |||||||||||| | |||||||| || ||||| Sbjct 7889 ATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTC 7830 Query 15250 GTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATT 15309 ||||| || |||||||| || || ||| ||| | ||||| || || | Sbjct 7829 TGGAGGAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGC 7770 Query 15310 TTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || ||||||||||||||||| || || ||||| ||||| || ||||| Sbjct 7769 TTCTACTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7716 Score = 138 bits (152), Expect = 8e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || |||||||| || ||||| ||||| || ||||| ||||| ||| |||| | Sbjct 8189 TCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCC 8130 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||||| ||||||||||| | |||||||| || ||||| ||||| || ||||| Sbjct 8129 ATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTT 8070 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| |||||| ||| ||| | ||||| || || ||| || || ||||| || Sbjct 8069 GTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTGAT 8010 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || || || ||||||||||| || ||||| Sbjct 8009 GGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7974 Score = 114 bits (126), Expect = 9e-21 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || |||||||| || ||||| ||||| || ||||| ||||| ||| |||| | Sbjct 7019 TCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCC 6960 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||||| ||||||||||| | |||||||| || ||||| ||||| |||||||| Sbjct 6959 ATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTT 6900 Query 15268 GTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 ||| || || ||| || ||| | ||||| || || | ||| || || | |||| Sbjct 6899 GTCTTGGATCTTAGCT-TTCACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAA 6841 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | ||||| ||||| | || || || || || ||||| || Sbjct 6840 TAGTTTTCCCTGTTAAGGTCTTAACGAAGATCTGCATGTT 6801 >seq503 Length=216272 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | | || | ||| ||||| || || |||||||| |||||||| Sbjct 162318 CCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAGAG 162259 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | | ||||| | ||| || ||||| | ||||| | ||||||||| ||| Sbjct 162258 AGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGAGGA 162199 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||||||||| |||||| ||| |||||| ||||||| |||||| | ||| || Sbjct 162198 ATTCCTTCTTTGTCTTGAATTTTTGCT-TTTACATTTTCTATCGTATCGGAAGCTTCAAC 162140 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || ||||| ||||| || || || || |||||||||||| Sbjct 162139 TTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCATA 162091 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || || ||||| || || || ||| || | | |||| || Sbjct 162765 AACAAGATGAAGAGTTGACTCCTTTTGAATATTATAGTCGGACAGCGTGCGACCGTCCTC 162706 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||| |||||| | ||||| | ||||| ||| |||||| |||||||| || Sbjct 162705 CAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTG 162646 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| ||| ||| |||| || || || | || || |||| || || ||||| Sbjct 162645 AATCTTGGCCTTGACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGAGTTATCGTTTT 162586 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||||||||||||||| Sbjct 162585 CCCAGTAAGGGTTTTTACAAAAATTTGCAT 162556 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || |||||||| || || || || || | | ||||||| |||||| Sbjct 161838 TGAAGAGTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGT 161779 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | ||||| | ||||| || ||||| |||||||| || ||| ||| Sbjct 161778 TTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTG 161719 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| |||| || || || | || || || | || || ||||| ||||| Sbjct 161718 GCCTTGACATTTTCAATAGTGTCTGAAGCCTCAACTTCCAGAGTTATCGTTTTTCCTGTA 161659 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || |||||||||||||||||||| Sbjct 161658 AGGGTTTTTACAAAAATTTGCAT 161636 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || |||||||| || || || || || | | ||||||| |||||| Sbjct 162066 TGAAGAGTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGT 162007 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | ||||| | ||||| || ||||| |||||||| || ||| ||| Sbjct 162006 TTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTG 161947 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| |||| || || || | || || |||| || || ||||| ||||| Sbjct 161946 GCCTTAACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTA 161887 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 || || || || |||||||||||| Sbjct 161886 AGGGTCTTGACGAAAATTTGCATA 161863 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || ||||| || || || || || | | ||||||| |||||| Sbjct 160855 TGAAGAGTCGATTCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGT 160796 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | ||||| | ||||| ||| |||||| |||||||| || ||| ||| Sbjct 160795 TTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTG 160736 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| |||| || || || || || |||| || || ||||| ||||| Sbjct 160735 GCCTTGACATTTTCAATAGTGTCTGATGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTA 160676 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||||||||| Sbjct 160675 AGGGTCTTGACGAAAATTTGCAT 160653 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || || || ||||||||||| ||| | | | ||||| | |||| Sbjct 161083 TGGAGAGTTGATTCCTTCTGAATGTTGTAATCTGATAGTGTGCGTCCATCTTCCAGTTGT 161024 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279 || || || | ||||| | ||||| || ||||||||||| || || |||||| Sbjct 161023 TTACCCGCAAAAATCAATCTCTGTTGATCTGGCGGAATTCCTTCCTTATCTTGAATTTTT 160964 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| |||||| ||||||| || ||| | ||| || || | || || ||||| ||||| Sbjct 160963 GCT-TTTACATTTTCTATCGTGTCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGT 160905 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || || |||||||||||| Sbjct 160904 AAGGGTCTTCACGAAAATTTGCATA 160880 >seq129 Length=1828789 Score = 109 bits (120), Expect = 4e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 ||||||| || || ||||| ||| | | | ||||| ||||| || ||||| | | Sbjct 1158785 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1158726 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATT 15292 | | |||||| || || ||||||||||||||| || ||||| ||| |||||| || Sbjct 1158725 TAAGACGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGATTTTAGCT-TTTACATTT 1158667 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || || ||||| |||||| || | ||| ||||||||||| |||| |||||| ||| Sbjct 1158666 TCAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACA 1158607 Query 15353 AAAATTTGCATATT 15366 || || ||||| || Sbjct 1158606 AATATCTGCATCTT 1158593 >seq2682 Length=416 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || || ||||| || || || || || | | ||||||| Sbjct 111 AACAAGATGAAGAGTCGATTCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTC 170 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||| |||||| | |||| | ||||| ||| |||||| |||||||| || Sbjct 171 CAATTGTTTACCAGCGAAGATCACTCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTG 230 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| ||| ||| |||| || || || | || || |||| || || ||||| Sbjct 231 AATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTT 290 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || || || |||||||||||| Sbjct 291 TCCTGTAAGGGTCTTGACGAAAATTTGCATA 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362154662246019