Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq916 91.5 3e-14 >seq916 Length=289624 Score = 91.5 bits (100), Expect = 3e-14 Identities = 347/538 (64%), Gaps = 14/538 (3%) Strand=Plus/Plus Query 17081 TATGCCACCGCTCGTGCGCTGGGTCTGCGCGCTAAAATCGACCAGGAGCAGGGCTGGCAT 17140 ||||| ||||||||||| | || | ||||||||||| |||||| | || ||||| Sbjct 155560 TATGCTACCGCTCGTGCAGTTGGATTACGCGCTAAAATTGACCAGCAAATTGGTTGGCAC 155619 Query 17141 AAAACGCTGTCCAACGTCGGGGTGAACGGTGTTACCGGCATCAGTGCATCCGTCTTCTGG 17200 ||||| || || || | ||| || || || || || || ||| | || | |||| Sbjct 155620 AAAACCCTATCAAATATGCCGGTAAATGGGGTAACGGGTATTAGTAAAGATGTTTACTGG 155679 Query 17201 GATTTGCAGAAGCCAGGCACTGATGCTGACCTGCTGAACGAGGCAGGCGTCACAACGCTG 17260 ||||| ||| | |||| |||||| || || || | || ||||| || Sbjct 155680 GATTTACAGGCTGAAAGCACCGATGCTAGTTATCTCAATGAAAATGAAGTAACAACATTG 155739 Query 17261 GTTCGCCGCGACGGTTTTCGTTTCTGGGGTAACCGTACCTGCTCTGATGACCCGCTGTTC 17320 || | || || | |||||| |||||| ||||| || |||| || | || Sbjct 155740 ATTTGTCGTAGTGGATATCGTTTTTGGGGTTCTCGTACTTGTACTGAAGATGGCTTTTTT 155799 Query 17321 CTCTTTGAAAGCTACACACGCACCGCGCAGGTACTGGCCGACACGATGGCTGAGGCGCAC 17380 | ||||||| |||||| || || | || || ||||| ||| | || || || || | Sbjct 155800 ATGTTTGAAAACTACACTCGAACAACTCAAGTTCTGGCGGACTCAATCGCGGATGC---C 155856 Query 17381 ATGTGGG---CTATTGATAAGCCCATCACCGCAACGCTGATTCGCGACATCATTGA--CG 17435 |||| | ||||||||| || || ||| | | || ||||| |||| || Sbjct 155857 ATGTTTGATTTTATTGATAAACCGATGCACGCCTCATTAATCAAAGACATTGTTGAATCG 155916 Query 17436 GCATCAATGCCAAATTCCGTGAACTGAAAAACAACGGTTATATCGTGGATGGCACATGCT 17495 | | ||| ||| ||||| ||||||||| || || |||||| | ||||| | | | Sbjct 155917 G--TAAATAACAAGTTCCGAGAACTGAAATCAAATGGCTATATCATTGATGGTAAAGCGT 155974 Query 17496 GGTT--CAGCGAAGAATCCAACGATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGA 17553 |||| ||| ||| |||| ||| | ||| | || || || | || || Sbjct 155975 GGTTTGATGCG-TCAAT-CAACACCAAGGATCAACACAAAGAAGGCAAGCTAAAAATTGA 156032 Query 17554 CTACGACTATACCCCGGTGCCTCCTCTCGAAAACCTGACCCTGCGCCAGCGTATTACT 17611 ||||| ||||| || || || ||||| ||||| | | | ||||||||||||| Sbjct 156033 TTACGATTATACGCCTGTTCCACCTCTTGAAAATTTAATGTTTAACCAGCGTATTACT 156090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98201516983020