Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_004928.1 Length=167560 Score E Sequences producing significant alignments: (Bits) Value seq2372 147 2e-30 seq3883 91.5 2e-13 >seq2372 Length=84335 Score = 147 bits (162), Expect = 2e-30 Identities = 306/450 (68%), Gaps = 12/450 (3%) Strand=Plus/Plus Query 142182 ATTAATCTGAATTCCGTAGTCCATATGTCGAATACGGTTTTCATCCACGCCTTTGTTATT 142241 |||||| || | || || || | ||| || | || ||||| || | || |||||| Sbjct 73700 ATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATT 73759 Query 142242 TTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCACATTGGATAATACGCTGTAGCAGC 142301 || || |||| ||| ||||||||||| ||||| | |||||| | | || || || Sbjct 73760 GCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGC 73819 Query 142302 ACCACCACGAATACCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAA 142361 || || || | || ||||||||||| ||||| || || |||||||| | || | || Sbjct 73820 CCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAA 73879 Query 142362 TGGAATAACACCCGTATGTCGAA--CTTCACCCATACCGATCTTAGAACCTTCTGCACGA 142419 ||||||| ||| ||||| ||| |||| || | |||| | ||| ||||| Sbjct 73880 TGGAATACAACCAGTATG--GAACGCTTCGCCACCGCGGATCGGACTTCCTAAGGCACGG 73937 Query 142420 AGCATACCAACGTTGATACCGATACCAGCTCGTTTAGAAATATATTCAATAATTGATGCT 142479 | | |||| | || || || || ||||| |||| || | |||| || ||| | ||| Sbjct 73938 ATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAATAG-CGCT 73996 Query 142480 -GAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCAATAACTACAC---AACTAGA 142535 | || ||||| || | | |||| || ||||| | ||||| ||||| Sbjct 73997 CGCGGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTA-- 74054 Query 142536 GAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATTGGGGTTGGCAATGAAACTTGATG 142595 ||||||||||||||||| || | || ||||||||||| || || | |||| || | Sbjct 74055 -AACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAA 74113 Query 142596 AGTAGAAACGGCATCATAAAAACGAATAAT 142625 || |||| |||||||||||||| |||| Sbjct 74114 GGTGGAAATCGCATCATAAAAACGTTTAAT 74143 >seq3883 Length=158444 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 62075 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 62134 |||||| || |||| || ||||| || || || ||| | ||||||||| || || Sbjct 116551 AGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTAC 116492 Query 62135 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 62194 |||||||| || ||||| || || | || ||||| ||||| |||| | | |||||| Sbjct 116491 GGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATC 116432 Query 62195 TTCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGACCACCTTCAA 62247 | | ||||| ||| | | |||||| || ||||| ||||||||||||| Sbjct 116431 TAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAA 116379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536026750252800