Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq503 109 4e-19 seq2682 91.5 9e-14 seq129 84.2 1e-11 >seq503 Length=216272 Score = 109 bits (120), Expect = 4e-19 Identities = 145/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 ||||| |||||||| ||||| || || |||| || || ||| |||||||| || ||| Sbjct 161832 GTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCA 161773 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGT 33289 || || || | || || || | || || |||||||| || |||| |||| Sbjct 161772 GCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCT-- 161715 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 | || ||| ||| ||||| | | ||| |||||||||||||||||||| ||||| Sbjct 161714 -TGACATTTTCAATAGTGTCTGAAGCCTCAACTTCCAGAGTTATCGTTTTTCCTGTAAGG 161656 Query 33350 GTTTTTACGAAAATTTGCAT 33369 |||||||| ||||||||||| Sbjct 161655 GTTTTTACAAAAATTTGCAT 161636 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || | || | ||||| || || || |||||||||||||||||||| Sbjct 162318 CCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAGAG 162259 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || | || || | |||||||||| ||| || || | ||| ||||| | || Sbjct 162258 AGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGAGGA 162199 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || |||||||| || ||| |||||| ||| ||||| ||| | || ||| Sbjct 162198 ATTCCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCTATCGTATCGGAAGCTTCAACT 162139 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || |||||||| ||||| || || |||||||||||||| Sbjct 162138 TCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 162092 Score = 100 bits (110), Expect = 2e-16 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 ||||| |||||||| ||||| || || |||| || || ||| |||||||| || ||| Sbjct 162060 GTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCA 162001 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGT 33289 || || || | || || || | || || |||||||| || |||| |||| Sbjct 162000 GCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCT-- 161943 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 | || ||| ||| ||||| | | ||| || ||||||||||||||||| ||||| Sbjct 161942 -TAACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGG 161884 Query 33350 GTTTTTACGAAAATTTGCAT 33369 || || |||||||||||||| Sbjct 161883 GTCTTGACGAAAATTTGCAT 161864 Score = 96.9 bits (106), Expect = 2e-15 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 ||||| || ||||| ||||| || || |||| || || ||| |||||||| || ||| Sbjct 160849 GTCGATTCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCA 160790 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGT 33289 || || || | || || || | || || |||||||| || |||| |||| Sbjct 160789 GCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTGGCCT-- 160732 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 | || ||| ||| ||||| | | ||| || ||||||||||||||||| ||||| Sbjct 160731 -TGACATTTTCAATAGTGTCTGATGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGG 160673 Query 33350 GTTTTTACGAAAATTTGCAT 33369 || || |||||||||||||| Sbjct 160672 GTCTTGACGAAAATTTGCAT 160653 Score = 91.5 bits (100), Expect = 9e-14 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || | || | ||||| || || || |||||||||||||||||||| Sbjct 160651 CCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAGAA 160592 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || | || |||||||| || ||| ||| || || | || ||||| | || Sbjct 160591 AGTGTGCGCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGTTGGTCTGGAGGA 160532 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || |||||||| || |||| ||| || | | ||| || ||| | || ||| Sbjct 160531 ATACCTTCTTTATCTTGAATCTTTGCTTTCACGTTCTCAATTGTATCGGAAGCTTCAACT 160472 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 || || || || |||||||| || || || || ||||| || |||||| |||| Sbjct 160471 TCAAGGGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCATGATTAT 160419 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| ||||| ||||| || || |||| || | ||| |||||||| || ||| Sbjct 162752 GTTGACTCCTTTTGAATATTATAGTCGGACAGCGTGCGACCGTCCTCCAATTGTTTACCA 162693 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGT 33289 || || || | || || || | || || |||||||| || |||| |||| Sbjct 162692 GCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTGGCCT-- 162635 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 | || ||| || ||||| | | || || |||||||||||||| || ||||| Sbjct 162634 -TGACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGAGTTATCGTTTTCCCAGTAAGG 162576 Query 33350 GTTTTTACGAAAATTTGCAT 33369 |||||||| ||||||||||| Sbjct 162575 GTTTTTACAAAAATTTGCAT 162556 >seq2682 Length=416 Score = 91.5 bits (100), Expect = 9e-14 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 ||||| || ||||| ||||| || || |||| || || ||| |||||||| || ||| Sbjct 124 GTCGATTCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCA 183 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGT 33289 || || | | || || || | || || |||||||| || |||| |||| Sbjct 184 GCGAAGATCACTCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTGGCCT-- 241 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 | || ||| ||| ||||| | | ||| || ||||||||||||||||| ||||| Sbjct 242 -TGACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGG 300 Query 33350 GTTTTTACGAAAATTTGCAT 33369 || || |||||||||||||| Sbjct 301 GTCTTGACGAAAATTTGCAT 320 >seq129 Length=1828789 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/196 (70%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATA 33239 ||||||| ||||| ||||| |||| | | || || ||||||||||||||| ||| | Sbjct 1158785 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1158726 Query 33240 TTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTG 33296 | | ||||||||| || | || || |||||||| || | | | || |||||| Sbjct 1158725 TAAGACGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGATTTTAGC---TTTTACAT 1158669 Query 33297 TTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTA 33356 ||| ||| || || | || || || || || || ||||| || || | |||||| | Sbjct 1158668 TTTCAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCA 1158609 Query 33357 CGAAAATTTGCATGTT 33372 | || || ||||| || Sbjct 1158608 CAAATATCTGCATCTT 1158593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318756002717982