Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq1913 165 1e-35 seq2372 93.3 7e-14 >seq1913 Length=212763 Score = 165 bits (182), Expect = 1e-35 Identities = 1010/1592 (63%), Gaps = 74/1592 (5%) Strand=Plus/Plus Query 7622 GGTAATATTAAA-GAAAATGCCAATAAAGACTCGAAAGTGATCCCTACAATGCGTGACTT 7680 || ||| || || |||||||| |||||||| ||||| || ||||| ||| || || Sbjct 31785 GGCAATTTTGAACGAAAATGCTAATAAAGATAGTAAAGTTATTCCTACTCAGCGCGATTT 31844 Query 7681 GGTAGCTGGTACAGTGTCGAAACAATATGCACTGGAAGAATATCT-ACCGAAGCACATTG 7739 |||| |||| || | ||||| ||||| | || | ||||| ||| || | ||| Sbjct 31845 ATTAGCAGGTATCGTTGCTAAACATTATGCTAAGCAATA-TATCTTACCTAAAGAAATTT 31903 Query 7740 CAGACGCTCAT-ATCGACGGCGATATTCATTTTCACGACCTTGATTATAGCCCACTATTC 7798 | || ||| |||| || || ||||||| ||| || || |||||| || | ||| Sbjct 31904 CTATTGCGCATGATCGT-GGTGAAATTCATTATCATGATCTGGATTATGCTCCCTTTTTC 31962 Query 7799 CCGCAATTCAACTGTATGCTTATCGACATCAAGGGGATGTT--CGAAGGTGGGTTCAAAA 7856 || || ||||| ||||| || || | | || ||| | | |||| | || |||| Sbjct 31963 CCTATGTTTAACTGCATGCTAATTGATTTAGATGGAATGCTAACCAAGG--GTTTTAAAA 32020 Query 7857 TGGGTAACGCTGAAATTGAAGAGCCAAATAGCATTGCGACTGCTGCGACTATCGTAA--- 7913 |||| || |||||||||||| ||| || ||| | ||||| | || |||| Sbjct 32021 TGGGAAATGCTGAAATTGAACCGCCTAAATCAATTTCAACTGCCACCGCT---GTAACCG 32077 Query 7914 CTCAGATCATTCAGCAAGTAAGCAGCCACATCTATGGCGGCAACACAATCAATCGCATCG 7973 | ||||| || |||||| |||||| || ||||| |||| ||| || ||||| || | Sbjct 32078 CACAGATTATAGCCCAAGTAGCCAGCCATATTTATGGTGGCACCACCATTAATCGTATTG 32137 Query 7974 ACGAAGTGCTTGCTCCTTATGT-TCG-CAAGTCGTACTACAAATGGTTAGAAATCGGTCG 8031 | ||||| || ||| | ||| ||| |||| | | | || || | | | | | Sbjct 32138 ATGAAGTTCTGGCTAAATTTGTATCGAAAAGTTATGAAAAACATCGTCGTATAGCCGAAG 32197 Query 8032 AGAAG-AACATCCAGATTCAGATTCAAAAGCCGCGATCTTTGCTCGTAAACGTGTTGAGA 8090 || | || ||| ||| || |||| || ||| |||| ||| | Sbjct 32198 AGTGGCAAATTCCTGAT----ATCGAAAA--------CTACGCTAAGTCACGTACTGAAA 32245 Query 8091 AAGAAACGTATGATGCGTTTCAGACTTTTGAATACCAAGTCAATACAATGCAGACTTCAA 8150 |||| |||||||| ||||| | || ||||| |||||||||| | || ||| | | Sbjct 32246 AAGAGTGTTATGATGCATTTCAATCGTTAGAATATGAAGTCAATACGCTACATACTGCGA 32305 Query 8151 ATGGTCAGACACCATTCACGACAATCAACTTCGGTTTAGGTACTTCGTGGGAAGAGAAAC 8210 |||| ||||| || || ||| | || |||||||| || |||||| Sbjct 32306 ATGGACAGACCCCTTTTGTTACATTTGGATTTGGTTTAGGCACCAGTTGGGAATCACGCT 32365 Query 8211 TGATTCAGAAAAGCATTCTGCAAAATCGTATTGCTGGTCTAGGCAAGACTAAGAAAACTG 8270 | ||||| || || | | ||||||| |||| |||| || | | | ||||| | Sbjct 32366 TAATTCAAGAATCGATCTTACGTGTGCGTATTGTTGGTTTAGGAAAAAATCATAAAACGG 32425 Query 8271 CTATCTTCCCGAAACTTGTTTTCACGTTGAAAGACGGTGTTAACTTGAAAGAAGGTGATC 8330 | | || || ||| | || || || | ||||| || ||||| || | |||| Sbjct 32426 CAGTTTTTCCTAAATTAGTCTTTGCGATCAAAGATGGGGTTAATCATAAGCCAACAGATC 32485 Query 8331 CTTGTTACGGAATCAAGAAGCTTGCTCTTGAGTGTGCAAGTAAACGCATGTACCCAGACA 8390 ||| || || | | || | |||||||| |||||| ||||| || || | Sbjct 32486 AAAATTATACGATTAAACAATTAGCATTAGAGTGTGCCGCTAAACGAATGTATCCTGATA 32545 Query 8391 TTTTGAACTATGAAAAGCTAGTTGAAACAACTGGCGGATTCAAGTCGCCTATGGGATGTC 8450 | | || ||||| | | || | ||| || ||| || | || ||||| |||| Sbjct 32546 TCCTTAATTATGATCAAGTGGTCAAGGTAACAGGATCATTTAAAACCCCAATGGGCTGTC 32605 Query 8451 GTTCATTCTTGGGTGAATGGAAAAATGAAGATGG--CGAAACTGTATTCGACGGTCGTAA 8508 || ||||| |||| | | | |||||||| | || | || || || ||||| Sbjct 32606 GTAGTTTCTTAGGTGTTT---ATGAAGAAGATGGGCAGCAAATTCAT--GATGGGCGTAA 32660 Query 8509 TAACTTAGGTGTTGTTTCTATAAACATCCCGCGTATTGCAATCGAAGCGTCGGGAGACAC 8568 ||| ||||| || || | |||| || || |||||||| || ||||| || || Sbjct 32661 TAATTTAGGGGTAATTAGTTTAAATATTCCTCGTATTGCCATTGAAGCAAAAGGTGA--- 32717 Query 8569 TGA---ACGTTTCTTCGAGATCTTGCACGAACGTTGTACACTAGCTTACGAAGCGTTGAT 8625 ||| ||| |||| | || ||| | |||||| |||| |||| || || Sbjct 32718 TGAGTCACGATTCTGGAAAATATTGGATCAACGTTTGGTCTTAGCGCGTAAAGCATTAAT 32777 Query 8626 GTTGCGTATCAAGCGTTTTGACGATGTTACTGCATCAGTTGCACCGATTCTGTACTGTGA 8685 | ||||| |||| | || |||||| ||| ||||||||| || | || || Sbjct 32778 GACACGTATTGCGCGTCTAGAAAATGTTAAAGCACGAGTTGCACCTATCTTATATATGGA 32837 Query 8686 AGGCGCTATG-GGCGTACGCTTGAAGCCAACTGATAAAGTCAGTGAAGTGTTCAAGAACG 8744 |||||| ||| ||||| || || || | ||||| || || | ||||| | | Sbjct 32838 AGGCGC-ATGTGGCGTTCGATTAAACGAAGATGATAGTGTGGCACAAATTTTCAAAGATG 32896 Query 8745 GTCGCGCAAGTATCTCACTCGGTTACATCGGTCTGCATGAGGC--TGTAACGCTGCTTTC 8802 |||| || ||| ||| | ||||| || ||| | ||||| || || || ||| |||| Sbjct 32897 GTCGAGCCTCTATTTCATTAGGTTATATTGGTATCCATGAAGCATTGCAA-GCT-CTTT- 32953 Query 8803 GCCTGACAAAGACATGCACACATTC------GAGTCGCAGCACAAGCAATTCCTTGCTGA 8856 | | | | || || | ||| ||| | || | || ||| ||| Sbjct 32954 --ATAGCGATAAGATTCATCCTTTCGATAGTGAGACATTGCGGGAAAAAGGCCTAGCT-- 33009 Query 8857 AAAGATTGTTGAGACGCTTA---GA-GCGTACACAGACGCATGGAAAGAACTGACTGGCT 8912 ||||| | ||| ||| || ||| ||| |||||||| || || | Sbjct 33010 ----ATTGTACA-ACGATTACGTGATGCG---GTAGAACAATGGAAAGCGGAAACAGGTT 33061 Query 8913 ACGGATTCAGTCTATACAGCACGCCAAGCGAATCGCTATGTGATCGTTTCTGTCGTCTCG 8972 ||||||| ||| |||| || |||||||| ||| |||||||||||||| || ||| | | Sbjct 33062 ACGGATTTAGTTTATATAGTACGCCAAGTGAAAATCTATGTGATCGTTTTTGCCGTTTAG 33121 Query 8973 ATCAAGAGAAATACGGTATCATTACGGGTATCAACGACAAAGACTATTACACGAACTCGT 9032 || || ||| || || ||| | ||| | || || |||| || || ||||| | || Sbjct 33122 ATGTGCAGGAATTTGGGATTATTTCAGGTGTGAATGATAAAGGTTACTATACGAA-TAGT 33180 Query 9033 TT-CACTTAGATGTGTTCAAGAAAGTGAATCCGTTCGAGAAGATTGATTTCGAAGCAGCA 9091 || || | |||||| || ||||| | || | | || | || || ||| ||| Sbjct 33181 TTCCATCTGGATGTGGAGAAAAAAGTTGACCCTTATCAAAAATTAGAGTTTGAAAAAGCC 33240 Query 9092 TACCCAATTCATGCGAATGGTGGTTTCATCTGCTATGCTGAATTCCCGAACATGCGAGAC 9151 || || || || |||||||| |||||||| |||| ||||| ||| || |||| | Sbjct 33241 TATCCTATGATCGCAAATGGTGGCTTCATCTGTTATGGTGAATACCCTAATATGCAGCAT 33300 Query 9152 AACATCAAAGGTCTAGAGCGCGTATGGGATTA 9183 || | |||| |||| ||||||||||| Sbjct 33301 AATCTTAAAGCGTTAGAAGATGTATGGGATTA 33332 >seq2372 Length=84335 Score = 93.3 bits (102), Expect = 7e-14 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 147369 ATTCCTTTCTGGAAACACTTTCAGACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGT 147428 ||||| || | || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 73885 ATTCCATTTTATAAGTACTTCCAAACAGCTGTGAAATCCTGTTCTCAAGGCGGGGTACGC 73826 Query 147429 GGCGGTGCTGCGACTCTGACTTACCCGATCTGGCACTTAGAAGTAGAAAAGCTTCTT-GT 147487 || || || || || | ||| ||| | ||||| |||||||||||||| ||| || || Sbjct 73825 GGGGGGGCGGCAACGGTATTTTATCCGTTATGGCATTTAGAAGTAGAAAA-CTTATTGGT 73767 Query 147488 TCTGAAGAACAACAAAGGTGTTGAAGAGAACCGTATTCGTCATCTTGACTACAGCGTATC 147547 || || ||| ||| ||||||| || || | || ||| | || || | ||| Sbjct 73766 GCTACGCAATAACCGTGGTATTGAAGAAAATCGCGTGCGCCATTTAGATTATGGGGTACA 73707 Query 147548 AATTAACCGATTGATGATGCAACGCCTGGTTAATAACGAGTACATCACGCTATTCAGCCC 147607 |||||| ||| ||| || || | |||| ||||| | ||| |||| || ||||| Sbjct 73706 AATTAATAAATTAATGTACCAGCGTTTAATTAAAAACGAAAATATCTCGCTGTTTAGCCC 73647 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 149382 GTAAATGCTCTTGAAGCTATTCGATTCTACGTTTCATTCGCGTGTACGTTCAACTTTGCC 149441 || ||||| ||||||||||||||||| || ||| || || || |||| ||||||| Sbjct 71742 GTCAATGCGCTTGAAGCTATTCGATTTTATGTTAGCTTTGCCTGCTCGTTTGCCTTTGCC 71683 Query 149442 GAGCAAGGCATTATGGAAGGTAACGCTAAAGTAATGAAGCTGATTGCTCGTGATGAACAG 149501 || | | | |||||||| || || ||| | || || |||||||| || |||||| Sbjct 71682 GAACGCGAATTAATGGAAGGAAATGCCAAAATTATTAAACTGATTGCCCGCGATGAAGCT 71623 Query 149502 CTTCACTTGAAAGGTACACAA 149522 |||||| | | ||||| ||| Sbjct 71622 CTTCACCTTACCGGTACTCAA 71602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783286367606160