Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1274 89.7 4e-13 >seq1274 Length=440581 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 12956 TTTTTACACCCTAATTCTAGTAAC-AATCTGTCAGCAACAAACTCTATGTACTGTTTCAT 13014 |||| ||| ||||||||| |||| ||||| ||||||||||| || || || || ||| Sbjct 123700 TTTTCACAGCCTAATTCT-GTAAGTAATCTATCAGCAACAAATTCGATATATTGACACAT 123758 Query 13015 TAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttC 13074 | ||||||||||||||| | || ||||| | |||||| |||||||| | || ||| Sbjct 123759 AAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCTTCCGTTAAAAATTCTTGTTC 123818 Query 13075 TATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTA-ATGGAGGATTTGATA 13133 || | || || || ||| || | | | || || | | |||| | | | Sbjct 123819 AATTTTGACGGCATCTTTAATAATTGATGTGA-CCCGATCGCAAGATGGTTTTTGTACAA 123877 Query 13134 GATGCTTAAACATCATACATGCAAAATCACAGTGCAATCC 13173 ||| || ||||||| |||||| |||||||| || ||||| Sbjct 123878 TATGTTTGAACATCAAACATGCGAAATCACAATGTAATCC 123917 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||||||||| || | ||| | |||||||||||||||||||| |||||||| || || | Sbjct 123523 TTTTTGATACTCTCCTACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTAAAGAGATGTG 123582 Query 12919 TTCCATAAAATCGAAAGGATTTT 12941 ||||||||||| || ||||||| Sbjct 123583 CTCCATAAAATCAAACGGATTTT 123605 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 ||||| ||||| ||||| | | ||||||||||| || | |||||| || || | ||| Sbjct 124454 ATATATGTATCAATCAACATGGAGTACATTTCTGAGTGCACATTTTCTATGGCGACTTGA 124513 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTT-CGGAGTAAAATCTTTCTGCTAA 13539 |||||||| ||||| | ||||| | ||| || |||| | || | ||||| ||| | | Sbjct 124514 AAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCCTGACT-AAATCGTTCGACAAG 124572 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC 13578 || || ||||| || || ||| ||| ||||| || || Sbjct 124573 ATTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGC 124611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430953200807718