Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq1913 268 1e-66 seq2372 122 1e-22 >seq1913 Length=212763 Score = 268 bits (296), Expect = 1e-66 Identities = 713/1072 (67%), Gaps = 18/1072 (2%) Strand=Plus/Minus Query 37711 CGTACACCGCAGGCGCCTTCGACGTAAAGAATCGGAGCCACGCTTGCCTTAACGCCACGC 37770 || || || || |||||||| | || | || || || || | ||| ||||| Sbjct 32855 CGAACGCCACATGCGCCTTCCATATATAAGATAGGTGCAACTCGTGCTTTAACATTTTCT 32796 Query 37771 AGACGATCAACACGTACCATTAGAGCTTGTTTAACTACTTCCATACGCTCTTCCAGAAGC 37830 ||||| ||| |||| ||||| |||| ||| ||| ||| | |||| | Sbjct 32795 AGACGCGCAATACGTGTCATTAATGCTTTACGCGCTAAGACCAAACGTTGATCCAATATT 32736 Query 37831 TCCCAGAAACGCATATGATTGCCGTTTGCGTCGAGTGCGATACGCGGCAGATTCAGAGTA 37890 | |||||| || | || || ||||| || | || ||||| || | ||| | | || Sbjct 32735 TTCCAGAATCGTGACTCATCACCTTTTGCTTCAATGGCAATACGAGGAATATTTAAACTA 32676 Query 37891 ACAACCCCTAGATTATTACGACCTTCGTGAACTTCATTGCCATTTTCGTCTTCCCAACGA 37950 | ||||||| ||||||||| || || |||| || | |||| ||| || | ||| | Sbjct 32675 ATTACCCCTAAATTATTACGCCCATCATGAATTTGCTGCCCATCTTCTTCATA--AAC-A 32619 Query 37951 TGCAAGAAACTGCGGCATCCCATAGGGAACTTAAAGCTGCCAGTTGTTTCAACAACTTTA 38010 |||||||| || || ||||| ||| ||||| || ||| | || |||| | Sbjct 32618 CCTAAGAAACTACGACAGCCCATTGGGGTTTTAAATGATCCTGTTACCTTGACCACTTGA 32559 Query 38011 TCATAACTCAGAATATCTGGATACATACGCTTAGAAGCGCACTCCAGTGCCAGTTGCTTG 38070 |||||| | || ||||| |||||||| || |||| || ||||| | ||| | ||| || Sbjct 32558 TCATAATTAAGGATATCAGGATACATTCGTTTAGCGGCACACTCTAATGCTAATTGTTTA 32499 Query 38071 ATACGATAAAGCGGGTCAGTTGGCTTCAAGTTGTGTCCGTCTTTCAGAGCAAACACCAGT 38130 || |||| | || |||||||| || || ||||| | ||||| || | | Sbjct 32498 ATCGTATAATTTTGATCTGTTGGCTTATGATTAACCCCATCTTTGATCGCAAAGACTAAT 32439 Query 38131 TTCGGGAACACCGGAGTGATACCCTCTTTGCCAAGTCCAGCCAGTCGAACTTTCAAGATC 38190 || || || || | || || | ||| || | ||| | | || || |||||| Sbjct 32438 TTAGGAAAAACTGCCGTTTTATGATTTTTTCCTAAACCAACAATACGCACACGTAAGATC 32379 Query 38191 GCTTCCTGAATCAGTTCAGCTTCCCAGCTTTCACCCAGACCAAAGCCGAATGTA-CAGAA 38249 | ||| ||||| | | |||||| || || | |||||| || |||||| || || Sbjct 32378 GATTCTTGAATTAAGCGTGATTCCCAACTGGTGCCTAAACCAAATCCAAATGTAACAAAA 32319 Query 38250 GGGAGTTTGACCGTTCGCGGAGTGAAGAGTGTTCACCTCGTATTCGAGTCCCTGCATTGC 38309 ||| || || || ||||| | || || || || || || ||||| | || | ||| Sbjct 32318 GGG-GTCTGTCCATTCGCAGTATGTAGCGTATTGACTTCATATTCTAACGATTGAAATGC 32260 Query 38310 ATCATACACAG-CTTTGTGAGTCTTTGCAATAGCGTATTCTTTCGC-ATCTGGAATTTTC 38367 |||||| ||| |||| | ||| || ||||||| | ||||| ||| ||||||| | Sbjct 32259 ATCATA-ACACTCTTTTTCAGTACGTGACTTAGCGTAGT-TTTCGATATCAGGAATTTGC 32202 Query 38368 CAATAACGGGCTTCGTCCAA--ATGCTTTTCATGAGTCATCTTAACATACGGTGCCAGCA 38425 || | |||| | | | ||| ||||||| | | || ||| | ||||| | Sbjct 32201 CACTCTTCGGCTA--TACGACGATGTTTTTCATAACTTTTCGATACAAATTTAGCCAGAA 32144 Query 38426 CTTCGTCAATACGATTAATTGTGTTGCCGCCGTAAATGTGACTTGCTACTTGCGCAATAA 38485 |||| |||||||||||||| ||| |||| || ||||| || || |||||||| || |||| Sbjct 32143 CTTCATCAATACGATTAATGGTGGTGCCACCATAAATATGGCTGGCTACTTGGGCTATAA 32084 Query 38486 TCTGAGCGACTACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTTTCGATCTGTGCATTTC 38545 |||| ||| ||| || | || || ||||| ||| || | ||| || | ||||||| Sbjct 32083 TCTGTGCGGTTACAGCGGTGGCAGTTGAAATTGATTTAGGCGGTTCAATTTCAGCATTTC 32024 Query 38546 CCA-TACGGAACCCGCGATCTAACATGCCTTTGACATCTATCAACATGCAGTTAAACATT 38604 ||| | ||||| | | || ||| || | | ||| || | ||||||||||||||| Sbjct 32023 CCATTTTAAAACCCTTGGT-TAGCATTCCATCTAAATCAATTAGCATGCAGTTAAACATA 31965 Query 38605 GGGAAGAATGGAGAATAGTCAAGATCATGGAAGTGCAGCCAGCCTTTTTCGTGTGCTTGC 38664 ||||| || |||| ||| || |||||||| | || | || || || || Sbjct 31964 GGGAAAAAGGGAGCATAATCCAGATCATGATAATGAATTTCACCACGATCATGCGCAATA 31905 Query 38665 ATAACTTCAACAGG-AAG--ATAATGCTTTGCAAAGTGCTTACTAACAATACCAGCAACC 38721 || ||| ||| ||| ||| ||||| ||| | || ||| ||| ||||| || | Sbjct 31904 GAAATTTCTTTAGGTAAGATATATTGCTTAGCATAATGTTTAGCAACGATACCTGCTAAT 31845 Query 38722 AGATCGCGTTGAGTAGGGATTACTTTAGCGTCTTTGTTAGCATTCTCATTCA 38773 | |||||| |||||||| || |||||| ||||| |||||||| || |||| Sbjct 31844 AAATCGCGCTGAGTAGGAATAACTTTACTATCTTTATTAGCATTTTCGTTCA 31793 Score = 134 bits (148), Expect = 2e-26 Identities = 287/421 (68%), Gaps = 16/421 (4%) Strand=Plus/Minus Query 36997 AGATGTTTTACTCGTTTTTGGACTTCATCCTGCTTGCCGCGATTAAATGCGCGAGAACCA 37056 || ||||| || || || ||||| ||||| || || |||||||| | || | | Sbjct 33569 AGGTGTTTAACACGACGTTTTACTTCTTCCTGTTTACCCGCATTAAATGGTCTAGCATCG 33510 Query 37057 GGCGCACCGAGATAACCGCATACGCGACGAATAACGTTCATTTT---GGTATCGTCATGA 37113 || || | ||| || ||||| |||||| |||| || ||| || ||||| || Sbjct 33509 GGGCTCCCCAAATAGCCACATACACGACGAGTAACCGACACTTTACTGGAATCGT---GA 33453 Query 37114 TTACCACATTTAGGACATTCGTACCCTTTGGAAGTAGCAGTGAATTCACCGTGATAGCCA 37173 |||||||| | ||||| | ||||||| |||| || |||||||| ||| ||| Sbjct 33452 TTACCACAACTTGGACAAGTGAACCCTTTACTAGTACAAGAAAATTCACCACTATAACCA 33393 Query 37174 CATTCAAAGCAAACATCAACAGGAGTATTTGTTCCGTAATACGGTGTGTTCAGATA-AGC 37232 |||||| | || |||||| ||| ||||| || || ||||| || | | | || ||| Sbjct 33392 CATTCATAACACTCATCAATAGGGGTATTCGTCCCATAATAAGGAACG--CGGCTATAGC 33335 Query 37233 -ATAATCCCAAACGTCTTCCAACGCTTTCAGATTATTTTTCATATTCGGATATTCTCCGT 37291 ||||||||| || ||||| |||||||| ||||||| | |||||| || ||||| || | Sbjct 33334 TATAATCCCATACATCTTCTAACGCTTTAAGATTATGCTGCATATTAGGGTATTCACCAT 33275 Query 37292 ATGAAATAAATCCACC---TGAACTCAGAGGAATAAATTGCTTTTCAAAATCAATCTTGT 37348 | | || || ||||| || ||| ||| ||| | |||||||| || | || | Sbjct 33274 AACAGATGAAGCCACCATTTGCGATCATAGG-ATAGGCT--TTTTCAAACTCTAATTTTT 33218 Query 37349 CATAAGGATTGGTATTATGACGGACGTCGAGGTGGAAGCTGTTTGTGTAATAATCTTTAT 37408 |||||| | || | || || || ||||| || || || || ||| |||||| Sbjct 33217 GATAAGGGTCAACTTTTTTCTCCACATCCAGATGGAAACTATTCGTATAGTAACCTTTAT 33158 Query 37409 C 37409 | Sbjct 33157 C 33157 >seq2372 Length=84335 Score = 122 bits (134), Expect = 1e-22 Identities = 302/456 (66%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 43574 GGACTAAAGAGCGTGATATAGTCGTCATTTTTCAGACGCTCGAAAAACAGCTTGTTGATT 43633 || ||||| |||| ||||| |||| || | | ||||| | | | | || || ||| Sbjct 73647 GGGCTAAACAGCGAGATATTTTCGTTTTTAATTAAACGCTGGTACATTAATTTATTAATT 73706 Query 43634 TGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTGTTTTTCAGA 43693 || | || || || | ||||| | ||||||||||| | || ||| || || Sbjct 73707 TGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTGCGTAGC 73766 Query 43694 ACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCAGCGCCACCG 43753 || | | ||||| ||||| | |||||| | ||||| | | || || || || ||| Sbjct 73767 ACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCCG 73826 Query 43754 CGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAGAACGGAATA 43813 ||||| || || || || || ||| || || || ||||| || || | || |||||| Sbjct 73827 CGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAATA 73886 Query 43814 ATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGAATAGCGCCA 43873 |||||| ||| |||| |||| || || || ||| |||||| || || Sbjct 73887 CAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAAGGCACGGATCTTACCG 73946 Query 43874 CCGTTGATACCGATACCAGCGCGTT-TGCTAATATAGTCAACGATTGAACTTGCGGTAGC 43932 | || || || || |||||||||| || || || | ||| || | || ||||| || Sbjct 73947 GCATTAATGCCAATTCCAGCGCGTTGTGATACG-TATTTAACAATAGCGCTCGCGGTGGC 74005 Query 43933 GTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAACTGGCGAGT 43992 ||||| || || || ||| || ||| || || || |||||||||||||| Sbjct 74006 ATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAAACTGGCGAGT 74065 Query 43993 CGGGGTTCGAACACCAGCAAGAATTGGCGTCGGTAG 44028 || || || || || || | ||||||||| ||||| Sbjct 74066 TGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAG 74101 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 40655 TTTGGCGATCTCGTACATTTCGGAATCATCTTCTGCATTCTGCCAAGCACGAATCAGATA 40714 ||| ||||| || |||||| | ||||||||| || | | | | | ||||| | | Sbjct 71542 TTTAGCGATATCAGCCATTTCTGGATCATCTTCACCACTGCGTAACGTATTAATCATAAA 71601 Query 40715 CTGGGTGCCTTTCAGGTGAAGCTGTTCATCCCGCGCAATCAGACGCATGATCTTAGCGTT 40774 || || || | |||||||| |||||| || |||||||| || || || || || Sbjct 71602 TTGAGTACCGGTAAGGTGAAGAGCTTCATCGCGGGCAATCAGTTTAATAATTTTGGCATT 71661 Query 40775 GCCTTCCATGATACCACGCTCACCGAATGAGAACGTGCAAGCAAAGCTAACATAGAAACG 40834 |||||||| | | || || | || | |||| ||| |||||||||||||| || || Sbjct 71662 TCCTTCCATTAATTCGCGTTCGGCAAAGGCAAACGAGCAGGCAAAGCTAACATAAAATCG 71721 Query 40835 AATCGCTTCCAAAGCG 40850 ||| ||||| ||||| Sbjct 71722 AATAGCTTC--AAGCG 71735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746168946982160