Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq916 132 9e-27 >seq916 Length=289624 Score = 132 bits (146), Expect = 9e-27 Identities = 529/821 (64%), Gaps = 25/821 (3%) Strand=Plus/Plus Query 15414 ATATCGTAAAAATTTCAGCCAGCGCGAGCTGATGGTTATCTGGCCTGATTTCCTCGCGTG 15473 ||| ||||||||||| | |||||| | ||||| || ||||||||||| ||| | Sbjct 155469 ATACCGTAAAAATTTTGGTGCGCGCGAAGTTATGGTGATTTGGCCTGATTTTATCGGTTT 155528 Query 15474 GGACACCGTCAAAAATACCACCGCAACGGCTT---ACGCCACTGCGCGTGCACTCGGCCT 15530 || | ||| || ||| || ||| ||| | || || || |||||| | || | Sbjct 155529 TGATA---TCACAATATCCAACGAAACTACTTTTTATGCTACCGCTCGTGCAGTTGGATT 155585 Query 15531 GCGTGCTTACATCGACCAGACTGTCGGCTGGCACAAAACCCTGTCTAACGTTGGTGTACA 15590 || ||| | || |||||| | || |||||||||||||| || || | ||| | Sbjct 155586 ACGCGCTAAAATTGACCAGCAAATTGGTTGGCACAAAACCCTATCAAATATGCCGGTAAA 155645 Query 15591 GGGCGTTACCGGCATCAGCGCCTCAGTGTTCTGGGATTTGCAGGCATCCGGCACCGATGC 15650 || || || || || || || | ||||||||| ||||| |||||||||| Sbjct 155646 TGGGGTAACGGGTATTAGTAAAGATGTTTACTGGGATTTACAGGCTGAAAGCACCGATGC 155705 Query 15651 TGACCTGCTCAACGAGGCCGGGGTTACAACGCTGGTACGCAAGGACGGTTTCCGCTTCTG 15710 | ||||| || | || ||||| || | | || | || || || Sbjct 155706 TAGTTATCTCAATGAAAATGAAGTAACAACATTGATTTGTCGTAGTGGATATCGTTTTTG 155765 Query 15711 GGGTAACCGCACCTGCTCGGATGACCCGCTTTTTCTGTTTGAGAACTACACTCGCACCGC 15770 |||| || || || | || || ||||| ||||||| ||||||||||| || | Sbjct 155766 GGGTTCTCGTACTTGTACTGAAGATGGCTTTTTTATGTTTGAAAACTACACTCGAACAAC 155825 Query 15771 GCAGGTACTGGCCGACACGATGGCCGAGGCGCACATGTGGGCGGTC---GACAAGCCCAT 15827 || || ||||| ||| | || || || || ||||| | | || || || || Sbjct 155826 TCAAGTTCTGGCGGACTCAATCGCGGATGC---CATGTTTGATTTTATTGATAAACCGAT 155882 Query 15828 TACCGCCACGCTCATTCGTGACATTGTTGA--CGGCATTAACGCCAAATTCCGCGAGCTG 15885 |||| | | || ||||||||||| ||| | || ||| ||||| || ||| Sbjct 155883 GCACGCCTCATTAATCAAAGACATTGTTGAATCGG--TAAATAACAAGTTCCGAGAACTG 155940 Query 15886 AAATCAAACGGCTACATCGTGGAGGGTAAATGCTGGTTCGATGAG-GAATCGAACGACAA 15944 |||||||| ||||| ||| | || |||||| ||||| |||| | |||| ||| ||| Sbjct 155941 AAATCAAATGGCTATATCATTGATGGTAAAGCGTGGTTTGATGCGTCAATC-AACACCAA 155999 Query 15945 GGAAACCCTCAAGGCCGGGAAACTGTATATCGACTACGACTATACACCGGTTCCGCCACT 16004 ||| | ||| | || || || | || || ||||| ||||| || ||||| || || Sbjct 156000 GGATCAACACAAAGAAGGCAAGCTAAAAATTGATTACGATTATACGCCTGTTCCACCTCT 156059 Query 16005 GGAAAGCCTGACCCTGCGCCAGCGTATCACCGATAAATATCTGGTGAATCTGGCCGAATC 16064 |||| | | | ||||||||| || |||| ||| | || || | || | || Sbjct 156060 TGAAAATTTAATGTTTAACCAGCGTATTACTGATAGTTATTTAGTTGATTTAGCAAATTC 156119 Query 16065 GGT--CAACAGCTAAGGAGCCTGAAACAACATGGCACTACCCCGTAAACTCAAATACCTG 16122 || || || |||||| | ||| ||||||| ||||| ||| | ||||| | Sbjct 156120 AGTTGCAGCAAACTAGGAGCGTTTAAC-TCATGGCATTACCCAAAAAATTGAAATATTTT 156178 Query 16123 AATATGTTCAATGACG--GCCTCAGCTACATGGGTGTTGTTGAATCCGTGACGCTGCCGA 16180 || |||| | ||| | || || ||| || |||| | | ||||| | || | || | Sbjct 156179 AACGTGTTTATTGATGGTGCTTC--CTATATTGGTGAAGCTAAATCCATCACATTACCTA 156236 Query 16181 AACTGACCCGCAAGCTCGAAAACTATCGCGGCGGCGGTATG 16221 |||| || | || | |||| |||||| || | |||||| Sbjct 156237 AACTTACACAAAAATTGGAAAGCTATCGTGGTGCTGGTATG 156277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97907136417284