Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22]
5,559 sequences; 249,185,056 total letters
Query= NC_005856.1
Length=94800
Score E
Sequences producing significant alignments: (Bits) Value
seq1614 450 8e-122
seq916 91.5 9e-14
>seq1614
Length=125919
Score = 450 bits (498), Expect = 8e-122
Identities = 888/1301 (68%), Gaps = 12/1301 (1%)
Strand=Plus/Minus
Query 71337 GCAGAACAAGCTGTACTTGGTGGCTTAATGCTTGATAACTGCCGCTGGGATGAAGTTGCA 71396
|| || ||||| ||| | ||| || ||||||| ||||| | ||||||||| | |||||
Sbjct 72034 GCCGAGCAAGCCGTATTAGGTAGCCTAATGCTAGATAATTTACGCTGGGATCATGTTGCT 71975
Query 71397 GATCGTATAGTTGCTGATGATTTTTATACCAGTGCTCATCGTGAAATTTTCAGTGAGATG 71456
|| || || || ||||||||||| | || ||||| ||||| |||| |||
Sbjct 71974 GAGCGCATTACTGAGCATGATTTTTATTCGCGTCATCATCAAATTATTTTTCGTGAAATG 71915
Query 71457 GAGAGGTTATTAAGTCATGGCAAACCGATTGATTTGATAACACTTGCTGAAGCACTTGAA 71516
| | | | | | || || || ||||| || || || | ||| || ||
Sbjct 71914 CAATCGATGGTCACGAAAGGTGTGCCTATAGATTTAATTACGCTATCAGAAAATCTAGAG 71855
Query 71517 CAGAACGGTAAATTAGAACGC--GCCGGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGA 71574
||| | | |||| ||| | || |||||||| || | || || ||||||| |
Sbjct 71854 CAGCGGGATGTATTA--ACGGATGTTGGCGGTTTTGCTTATTTAGCCGAATTGTCAAAAA 71797
Query 71575 ACACGCCCAGCTCGGCAAATATTTGTGCTTATGCGGATATCGTTCGTGAACGCGCGGTTG 71634
| || || ||| || ||| || ||||||| ||||||| |||| | || || |
Sbjct 71796 ATACCCCAAGCACGATCAATGTTAATGCTTATACGGATATTATTCGCCAGCGGGCAATAA 71737
Query 71635 TTCGTGAAATGATTTCCGTCGCAAATGAAATAGCCGA-AGCTGGATATGCGCAGGATGGC 71693
| |||||| | || | || | || || || || || ||||| ||| | | || ||
Sbjct 71736 TGCGTGAATTAATCGCTGTGTCTAACGATATTGCAGATAGCTGT-TATTCACCAGAAGGA 71678
Query 71694 AGGGGCAGCAATGAATTGCTGGATATGGCCGAGCGCCGCGTTTTTGAAATAGCTGAAAA- 71752
| | || | || || | ||| || ||| || ||| | || ||||||||
Sbjct 71677 CGTGAAAGTGAAGACTTATTAGATTACGCTGAGACTAAGGTGTTTCAGATTGCTGAAAAG 71618
Query 71753 ACGACAAAAGAGCGGTAGTGGTCCAAAAGATATCGCCAGCATTCTCGATGCAACGGTATC 71812
| | | | | || || ||||| ||| ||| | | | || || | ||| || |
Sbjct 71617 AGGGCGACA-AGTGGCGAAGGTCCTAAAAGTATTACAACTGTACTGGAAGAAACCGTTGC 71559
Query 71813 TCGCATAGAAGAGTTGTTTCAGCGACCACATGATGGTGTAACGGGGCTTGATACGGGATT 71872
||| || ||||| | |||||||||||||| ||||| ||||| || || || || ||
Sbjct 71558 TCGTATTGAAGAACTCTTTCAGCGACCACACGATGGCGTAACCGGTGTTTCGACTGGTTT 71499
Query 71873 TACCGATCTCAATAAGAAGACGGCAGGGCTT-CAGCCGTCCGATCTCATCATTGTCGCCG 71931
| |||||| |||| ||||| || |||||| |||| || ||| | |||||||| ||||
Sbjct 71498 TGTCGATCTTGATAAAAAGACAGC-GGGCTTACAGCGTTCAGATTTAATCATTGTTGCCG 71440
Query 71932 CCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAATGCCGCAGTTC 71991
|||| || |||||||| || ||||| ||||| ||||| | ||||||||||| |
Sbjct 71439 CCCGTCCTTCTATGGGTAAAACCACATTTGCAATGAACTTATGTGAAAATGCCGCCATGA 71380
Query 71992 GTAACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAGCTGATGATGC 72051
| |||||||| ||| || | |||||||| || ||||| | || | |||||||
Sbjct 71379 TGCAGGATAAGCCAGTACTGATCTTTAGCCTAGAAATGCCTGCTGAACAAATTATGATGC 71320
Query 72052 GCTCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGGGCAACTTAACG 72111
| || || || | | ||||| ||||| || |||||||| |||||||| | | |
Sbjct 71319 GTATGCTTGCCTCCTTATCTCGCGTCGATCAAACCCGTATTCGAACAGGGCAGTTAGATG 71260
Query 72112 ACGAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAGAATATTT 72171
||||||||||||| || ||||| || | ||||||||| || |||| ||| | || || |
Sbjct 71259 ACGAGGATTGGGCCCGCATTTCTAGCACTATGGGTATTTTGCTGGAAAAGAAAAACATGT 71200
Query 72172 TTATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTT 72231
|||||| ||||| | | || || | || | ||||| || ||| | ||| |||
Sbjct 71199 ATATTGACGACTCTTCTGGTTTAACCCCAATGGAATTGCGTTCACGGGCTAGACGTATTT 71140
Query 72232 ATAAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATGCGCGTCC 72291
|| ||| |||| ||| | |||||||||||| ||||||| || || | ||||| ||
Sbjct 71139 ATCGTGAACATGGCGGTCTAAGCATGATTATGGTCGACTATCTACAGTTAATGCGTGT-A 71081
Query 72292 CCGAG-CTGCAAGATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCG 72350
||||| | || | || ||||||||||| ||||| ||||| || ||| | || ||
Sbjct 71080 CCGAGTTTATCCGAAAGTCGTACGCTGGAAATAGCCGAAATTTCGCGATCATTAAAAGCC 71021
Query 72351 TTGGCGAAGGAATTACAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAA 72410
| || || |||||| |||| || |||||||| || || || | ||||| |||||
Sbjct 71020 CTTGCTAAAGAATTAGAAGTGCCAGTGGTGGCGTTATCCCAGTTAAATCGTAGTCTTGAG 70961
Query 72411 CAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAG 72470
||||| || || ||| | || || || || |||||||| ||||| || ||||||||||
Sbjct 70960 CAGCGAGCTGATAAAAGGCCCGTTAACTCTGATTTACGAGAATCCGGTTCAATTGAGCAA 70901
Query 72471 GACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATG 72530
|| || || ||||||||||| | ||||| || ||||||||||| || ||
Sbjct 70900 GATGCGGATGTGATTATGTTTATTTATCGTGATGAAGTTTATCATGAAAATTCTGATCAT 70841
Query 72531 AAGGGCATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGA 72590
|| || ||||| || | || | || ||||| || |||||||||||||| | || |||
Sbjct 70840 AAAGGTATTGCAGAAATCATACTTGGTAAGCAGCGTAATGGCCCAATTGGTAAAGTAAGA 70781
Query 72591 TTGGCTTTTAACGGCCAATACTCACGGTTTGATAACTATGC 72631
|| ||| | || |||| || || ||||||||||||||
Sbjct 70780 TTAAAATTTCAGGGGCAATGGTCTCGTTTTGATAACTATGC 70740
>seq916
Length=289624
Score = 91.5 bits (100), Expect = 9e-14
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 70933 GGCCCTTTAGCTCAGT-GGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAG 70991
||||| |||||||||| ||| ||||| | ||||||||||||| |||||| ||||||||
Sbjct 161622 GGCCCCTTAGCTCAGTTGGTCAGAGCAGTCGACTCATAATCGATTGGTCACTGGTTCAAG 161563
Query 70992 TCCGGTAGGGGCCACCA 71008
||| |||||||||||||
Sbjct 161562 TCCAGTAGGGGCCACCA 161546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 303214655720439
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |