Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq1614 450 8e-122 seq916 91.5 9e-14 >seq1614 Length=125919 Score = 450 bits (498), Expect = 8e-122 Identities = 888/1301 (68%), Gaps = 12/1301 (1%) Strand=Plus/Minus Query 71337 GCAGAACAAGCTGTACTTGGTGGCTTAATGCTTGATAACTGCCGCTGGGATGAAGTTGCA 71396 || || ||||| ||| | ||| || ||||||| ||||| | ||||||||| | ||||| Sbjct 72034 GCCGAGCAAGCCGTATTAGGTAGCCTAATGCTAGATAATTTACGCTGGGATCATGTTGCT 71975 Query 71397 GATCGTATAGTTGCTGATGATTTTTATACCAGTGCTCATCGTGAAATTTTCAGTGAGATG 71456 || || || || ||||||||||| | || ||||| ||||| |||| ||| Sbjct 71974 GAGCGCATTACTGAGCATGATTTTTATTCGCGTCATCATCAAATTATTTTTCGTGAAATG 71915 Query 71457 GAGAGGTTATTAAGTCATGGCAAACCGATTGATTTGATAACACTTGCTGAAGCACTTGAA 71516 | | | | | | || || || ||||| || || || | ||| || || Sbjct 71914 CAATCGATGGTCACGAAAGGTGTGCCTATAGATTTAATTACGCTATCAGAAAATCTAGAG 71855 Query 71517 CAGAACGGTAAATTAGAACGC--GCCGGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGA 71574 ||| | | |||| ||| | || |||||||| || | || || ||||||| | Sbjct 71854 CAGCGGGATGTATTA--ACGGATGTTGGCGGTTTTGCTTATTTAGCCGAATTGTCAAAAA 71797 Query 71575 ACACGCCCAGCTCGGCAAATATTTGTGCTTATGCGGATATCGTTCGTGAACGCGCGGTTG 71634 | || || ||| || ||| || ||||||| ||||||| |||| | || || | Sbjct 71796 ATACCCCAAGCACGATCAATGTTAATGCTTATACGGATATTATTCGCCAGCGGGCAATAA 71737 Query 71635 TTCGTGAAATGATTTCCGTCGCAAATGAAATAGCCGA-AGCTGGATATGCGCAGGATGGC 71693 | |||||| | || | || | || || || || || ||||| ||| | | || || Sbjct 71736 TGCGTGAATTAATCGCTGTGTCTAACGATATTGCAGATAGCTGT-TATTCACCAGAAGGA 71678 Query 71694 AGGGGCAGCAATGAATTGCTGGATATGGCCGAGCGCCGCGTTTTTGAAATAGCTGAAAA- 71752 | | || | || || | ||| || ||| || ||| | || |||||||| Sbjct 71677 CGTGAAAGTGAAGACTTATTAGATTACGCTGAGACTAAGGTGTTTCAGATTGCTGAAAAG 71618 Query 71753 ACGACAAAAGAGCGGTAGTGGTCCAAAAGATATCGCCAGCATTCTCGATGCAACGGTATC 71812 | | | | | || || ||||| ||| ||| | | | || || | ||| || | Sbjct 71617 AGGGCGACA-AGTGGCGAAGGTCCTAAAAGTATTACAACTGTACTGGAAGAAACCGTTGC 71559 Query 71813 TCGCATAGAAGAGTTGTTTCAGCGACCACATGATGGTGTAACGGGGCTTGATACGGGATT 71872 ||| || ||||| | |||||||||||||| ||||| ||||| || || || || || Sbjct 71558 TCGTATTGAAGAACTCTTTCAGCGACCACACGATGGCGTAACCGGTGTTTCGACTGGTTT 71499 Query 71873 TACCGATCTCAATAAGAAGACGGCAGGGCTT-CAGCCGTCCGATCTCATCATTGTCGCCG 71931 | |||||| |||| ||||| || |||||| |||| || ||| | |||||||| |||| Sbjct 71498 TGTCGATCTTGATAAAAAGACAGC-GGGCTTACAGCGTTCAGATTTAATCATTGTTGCCG 71440 Query 71932 CCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAATGCCGCAGTTC 71991 |||| || |||||||| || ||||| ||||| ||||| | ||||||||||| | Sbjct 71439 CCCGTCCTTCTATGGGTAAAACCACATTTGCAATGAACTTATGTGAAAATGCCGCCATGA 71380 Query 71992 GTAACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAGCTGATGATGC 72051 | |||||||| ||| || | |||||||| || ||||| | || | ||||||| Sbjct 71379 TGCAGGATAAGCCAGTACTGATCTTTAGCCTAGAAATGCCTGCTGAACAAATTATGATGC 71320 Query 72052 GCTCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGGGCAACTTAACG 72111 | || || || | | ||||| ||||| || |||||||| |||||||| | | | Sbjct 71319 GTATGCTTGCCTCCTTATCTCGCGTCGATCAAACCCGTATTCGAACAGGGCAGTTAGATG 71260 Query 72112 ACGAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAGAATATTT 72171 ||||||||||||| || ||||| || | ||||||||| || |||| ||| | || || | Sbjct 71259 ACGAGGATTGGGCCCGCATTTCTAGCACTATGGGTATTTTGCTGGAAAAGAAAAACATGT 71200 Query 72172 TTATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTT 72231 |||||| ||||| | | || || | || | ||||| || ||| | ||| ||| Sbjct 71199 ATATTGACGACTCTTCTGGTTTAACCCCAATGGAATTGCGTTCACGGGCTAGACGTATTT 71140 Query 72232 ATAAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATGCGCGTCC 72291 || ||| |||| ||| | |||||||||||| ||||||| || || | ||||| || Sbjct 71139 ATCGTGAACATGGCGGTCTAAGCATGATTATGGTCGACTATCTACAGTTAATGCGTGT-A 71081 Query 72292 CCGAG-CTGCAAGATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCG 72350 ||||| | || | || ||||||||||| ||||| ||||| || ||| | || || Sbjct 71080 CCGAGTTTATCCGAAAGTCGTACGCTGGAAATAGCCGAAATTTCGCGATCATTAAAAGCC 71021 Query 72351 TTGGCGAAGGAATTACAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAA 72410 | || || |||||| |||| || |||||||| || || || | ||||| ||||| Sbjct 71020 CTTGCTAAAGAATTAGAAGTGCCAGTGGTGGCGTTATCCCAGTTAAATCGTAGTCTTGAG 70961 Query 72411 CAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAG 72470 ||||| || || ||| | || || || || |||||||| ||||| || |||||||||| Sbjct 70960 CAGCGAGCTGATAAAAGGCCCGTTAACTCTGATTTACGAGAATCCGGTTCAATTGAGCAA 70901 Query 72471 GACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATG 72530 || || || ||||||||||| | ||||| || ||||||||||| || || Sbjct 70900 GATGCGGATGTGATTATGTTTATTTATCGTGATGAAGTTTATCATGAAAATTCTGATCAT 70841 Query 72531 AAGGGCATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGA 72590 || || ||||| || | || | || ||||| || |||||||||||||| | || ||| Sbjct 70840 AAAGGTATTGCAGAAATCATACTTGGTAAGCAGCGTAATGGCCCAATTGGTAAAGTAAGA 70781 Query 72591 TTGGCTTTTAACGGCCAATACTCACGGTTTGATAACTATGC 72631 || ||| | || |||| || || |||||||||||||| Sbjct 70780 TTAAAATTTCAGGGGCAATGGTCTCGTTTTGATAACTATGC 70740 >seq916 Length=289624 Score = 91.5 bits (100), Expect = 9e-14 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 70933 GGCCCTTTAGCTCAGT-GGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAG 70991 ||||| |||||||||| ||| ||||| | ||||||||||||| |||||| |||||||| Sbjct 161622 GGCCCCTTAGCTCAGTTGGTCAGAGCAGTCGACTCATAATCGATTGGTCACTGGTTCAAG 161563 Query 70992 TCCGGTAGGGGCCACCA 71008 ||| ||||||||||||| Sbjct 161562 TCCAGTAGGGGCCACCA 161546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303214655720439