Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_005859.1 Length=121750 Score E Sequences producing significant alignments: (Bits) Value seq3883 132 4e-26 seq2331 129 5e-25 seq1913 93.3 3e-14 >seq3883 Length=158444 Score = 132 bits (146), Expect = 4e-26 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 27655 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGCTGTTCACGCGTCAGTG 27714 ||||||| | |||||||| || ||| |||| ||||| || || || || || | | Sbjct 116564 ATTACATTGATTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAG 116505 Query 27715 CGTTAAAACGCACAGCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGAT 27774 ||||||||| || || || || |||||||| ||||||||||| || || |||||||||| Sbjct 116504 AGTTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGAT 116445 Query 27775 GTTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGTTGACCAC 27834 || | |||||| || | |||||| |||| || || ||||| ||||| ||||||| Sbjct 116444 TTTCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCAC 116385 Query 27835 CTTCAA 27840 |||||| Sbjct 116384 CTTCAA 116379 >seq2331 Length=68774 Score = 129 bits (142), Expect = 5e-25 Identities = 133/172 (77%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 27669 GTAAATGTACGACTAATAACGTCGTTCTGCTGTTCACGCGTCAGTGCGTTAAAACGCACA 27728 ||||| |||||| ||||||||| || ||||| |||| | || ||||||||||| Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 27729 GCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTT--CTGTGCAT 27786 || || || |||||||| ||||||||||| ||||| |||||||| ||||| | | | | Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 27787 CCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGTTGACCACCTTC 27838 | || | | ||||||| ||| ||||| ||||||| |||||| |||||||| Sbjct 23761 TCTAACGTT--TCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTC 23810 >seq1913 Length=212763 Score = 93.3 bits (102), Expect = 3e-14 Identities = 313/479 (65%), Gaps = 15/479 (3%) Strand=Plus/Plus Query 54501 ACTGAAAAAGAAGTCTATGATGCTTGTCAGGGTCTAGAGTATGAGATCAATACGATGTTC 54560 ||||||||||| |||||||| | ||| |||| ||||| |||||||| | | Sbjct 32239 ACTGAAAAAGAGTGTTATGATGCATTTCAATCGTTAGAATATGAAGTCAATACG--CTAC 32296 Query 54561 A-ACT-CTAATGGTCAGAGTCCATTTATTACTTTTGGTTTTGGTCTAGGAACTTCTTGGG 54618 | ||| | ||||| |||| || ||| |||| ||||| |||||| |||| || ||||| Sbjct 32297 ATACTGCGAATGGACAGACCCCTTTTGTTACATTTGGATTTGGTTTAGGCACCAGTTGGG 32356 Query 54619 AAGCACGTCTAATACAGAAAGCAATACTGAAAGTACGTATGGATGGCTTAGGCATCAATA 54678 || |||| |||| || || | || | || ||||| | ||| ||||| | ||| Sbjct 32357 AATCACGCTTAATTCAAGAATCGATCTTACGTGTGCGTATTGTTGGTTTAGGAAAAAATC 32416 Query 54679 AACGTACAGCTATCTTTCCGAAACTGGTGTTTGTTCTGCGTGATGGCGTAAATATGAAGC 54738 | || || | ||||| ||| | || |||| | ||||| || ||| |||| Sbjct 32417 ATAAAACGGCAGTTTTTCCTAAATTAGTCTTTGCGATCAAAGATGGGGTTAATCATAAGC 32476 Query 54739 CTGGAGATGTTAATTATGACATCAAGAAGTTAGCTATGAAATGTACTGCTGAACGTATGT 54798 | |||| |||||| || || | ||||| | | ||| | ||| |||| |||| Sbjct 32477 CAACAGATCAAAATTATACGATTAAACAATTAGCATTAGAGTGTGCCGCTAAACGAATGT 32536 Query 54799 ATCCAGACTAT-ATCAGCTATGATAAGGTTGTGGAAGTTACTGGTGACTATAAAGTTTCT 54857 |||| || ||| | | |||||| | || || | || || || | |||| | Sbjct 32537 ATCCTGA-TATCCTTAATTATGATCAAGTGGTCAAGGTAACAGGATCATTTAAAACCCCA 32595 Query 54858 ATGGGCTGCCGTTCATTCTTAGCTG---CTACAGAAGATGG--TGAAA----CTGCCGGT 54908 |||||||| ||| ||||||| || | ||||||||| | || || || Sbjct 32596 ATGGGCTGTCGTAGTTTCTTAGGTGTTTATGAAGAAGATGGGCAGCAAATTCATGATGGG 32655 Query 54909 CGTAATAACTTGGGTGTTGTTTCTGTAAACTTGCCTAGAATTGCTATCGAAGCTGAAGG 54967 |||||||| || || || || | |||| | ||| | ||||| || ||||| |||| Sbjct 32656 CGTAATAATTTAGGGGTAATTAGTTTAAATATTCCTCGTATTGCCATTGAAGCAAAAGG 32714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 389448812933489