Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq133 125 9e-24 seq107 120 4e-22 >seq133 Length=1210847 Score = 125 bits (138), Expect = 9e-24 Identities = 155/213 (73%), Gaps = 12/213 (6%) Strand=Plus/Plus Query 164715 TAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGA 164774 |||| ||||||| | ||| ||||||| || || |||||| |||| ||| || ||| Sbjct 803308 TAGTGGATTACATATAATTATTTTTGACGAAATTGATGCTATTTGTAAATCTCGAGGTAG 803367 Query 164775 TAAT------ATTA------TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGA 164822 | | | || |||| ||| | || || |||||||||||| | |||||||| Sbjct 803368 TGTTGCCGGAAATACAGGGGTTCACGATACTGTTGTAAATCAGTTGCTTGCAAAAATAGA 803427 Query 164823 TGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAAT 164882 |||||| || ||||||||||| | || | |||||||| ||| || ||| | || Sbjct 803428 TGGTGTGGAGCAGCTAAATAATATTCTCGTTATTGGTATGACTAACAGAAGAGATATGAT 803487 Query 164883 TGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 |||||| |||||||||||||||||| ||||||| Sbjct 803488 TGATGAAGCTTTATTACGACCTGGTAGATTAGA 803520 Score = 109 bits (120), Expect = 7e-19 Identities = 213/312 (68%), Gaps = 6/312 (2%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| | || || |||||||| | ||||| ||||| |||||| | |||||| Sbjct 802905 ATTGGGACTTCCAAAAAATGGGAATTGGTGGTTTAGATAAAGAATTCAGTGCTATTTTTC 802964 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 | |||||||||| || || |||| ||||| | | |||| |||||||||| Sbjct 802965 GGAGAGCATTTGCGTCACGAGTTTTTCCACCAGAAATTGTTACTCAATTGGGCTGTAAAC 803024 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | |||||||||||| | |||| || || ||| |||||||| |||||||| || Sbjct 803025 ATGTGAAAGGAATTTTACTTTATGGCCCACCAGGTACAGGTAAAACGTTAATGGCACGGC 803084 Query 164573 GCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | | ||||| | | || || |||||| || ||||| ||| | | | Sbjct 803085 AAATAG-GGACTATGTTAAATGCTAGAGAACC--TAAAATCGTCAATGGCCCTCAGATTT 803141 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 || | |||||||| || || ||||||||| ||||| || ||| || ||||||| Sbjct 803142 TGGATAAATATGTTGGAGAAAGTGAAGCTAATATTAGACGATTATTTGCTGATGCTGAAG 803201 Query 164690 AAGAACAAAAGA 164701 | || | |||| Sbjct 803202 AGGAGGAGAAGA 803213 >seq107 Length=1190935 Score = 120 bits (132), Expect = 4e-22 Identities = 154/213 (72%), Gaps = 12/213 (6%) Strand=Plus/Minus Query 164715 TAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGG--- 164771 |||| ||||||| | ||| |||| || || || |||||| |||| ||| || || Sbjct 217132 TAGTGGATTACATATAATTATTTTCGACGAAATTGATGCTATTTGTAAATCTCGAGGGAG 217073 Query 164772 ------TGATAATATTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGA 164822 || |||| |||||||| | || || ||||||||||| | |||||||| Sbjct 217072 TGTTGCTGGAAATACAGGAGTTCATGATACTGTCGTAAATCAGTTGCTCGCAAAAATAGA 217013 Query 164823 TGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAAT 164882 |||||| || |||||||||||| | || | |||||||| || ||| ||| | || Sbjct 217012 TGGTGTGGAGCAGTTAAATAATATTCTTGTTATTGGTATGACTAATAGACGAGATATGAT 216953 Query 164883 TGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 |||||| |||||| ||||||||||| ||||||| Sbjct 216952 TGATGAAGCTTTACTACGACCTGGTAGATTAGA 216920 Score = 104 bits (114), Expect = 3e-17 Identities = 212/312 (68%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| | ||| || |||||||| | |||||||| ||| ||||| | |||||| Sbjct 218032 ATTGGGACTTTCAAAAAATGGGAATTGGTGGACTGGATAATGAATTCAGTGCTATTTTTC 217973 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 || ||||||| || || || |||| ||||| | | || | || ||||| | Sbjct 217972 GAAGAGCATTCGCGTCACGAGTTTTTCCGCCAGAAATTGTTACTCAACTGGGTTGTAAGC 217913 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 | |||||||||||||| | |||| || || ||| |||||||| |||||||| | Sbjct 217912 ACGTAAAAGGAATTTTACTTTATGGTCCACCAGGTACAGGTAAAACGTTAATGGCAAGGC 217853 Query 164573 GCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | | ||||| | | || || ||||| |||||||| ||| | | | Sbjct 217852 AGATAG-GAACTATGTTAAATGCTAGAGAACC--CAAAATCGTTAATGGCCCTCAGATTT 217796 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 || | |||||||| || || ||||||||||||||| || ||| || ||||||| Sbjct 217795 TGGATAAATATGTTGGAGAAAGTGAAGCTAATGTTAGACGATTATTTGCTGATGCTGAAG 217736 Query 164690 AAGAACAAAAGA 164701 |||| | |||| Sbjct 217735 AAGAGGAGAAGA 217724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595830594344400