Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq633 269 1e-67 >seq633 Length=964802 Score = 269 bits (298), Expect = 1e-67 Identities = 437/617 (71%), Gaps = 15/617 (2%) Strand=Plus/Plus Query 3530 GCtttttttATCAACAGAGGTGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTC 3589 || |||||| | || | | |||||| ||||||||||| || || ||| ||||| Sbjct 151557 GCATTTTTTTTAAATCGTGCTGCTGTTAAAATGGCAAATATAGACAGAGCATGTAATTTT 151616 Query 3590 GTATTTAC---AC--GATTGAATGATGGATCAAATGAATTGATATATTTTGCTGACGTAT 3644 | ||||| || || | ||| ||| ||||| || |||| || || || || | Sbjct 151617 ATGTTTACTAAACCAGAAGGTTTGAGGGAC--AATGAGCTGCTATACTTCGCAGATGTTT 151674 Query 3645 GCGCTGGTCCAGGTGGTTTCAGTGAATATATGTTATGGAGAAAGAAATGGAATATCAAAG 3704 | ||||| ||||||||||| ||||||||| || ||||| | ||||||||| | |||| Sbjct 151675 GTGCTGGACCAGGTGGTTTTAGTGAATATGTGCTATGGCGGAAGAAATGGCGTGCTAAAG 151734 Query 3705 GTTATGGTATGACGTTACGCGaaaaaaaTGATTTTCAACTGAACAGATTTTACGATAACT 3764 | | |||| | || ||| | | |||||||||| ||| | | | |||||| | || Sbjct 151735 GATTTGGTCTTACTTTAAGGAATGAAAATGATTT-CAAATTAGCTGATTTTTATGCAGCT 151793 Query 3765 TTTCG-GAAACTTTACACCCGTATTATGGTCCGCTTAACGATGGTAATATCTACAATTCA 3823 | | ||||| || || || |||||||| || | ||||| || | | | || Sbjct 151794 CCTTGTGAAACATTTCATCCATATTATGGACCAAAAGAAAATGGTGATGTTTTTGACCCA 151853 Query 3824 CAAAATCAGAAAGGTTTTTGTGAAA-TGATTATGAAAGATACCGAAGGAAAAGGTGTACA 3882 | ||||| | ||| ||| || | || ||| | ||||| | || ||||| || || Sbjct 151854 GATAATCA-AGAGGCATTTACAAATCTTATAATGCAGCATACCCATGGCAAAGGAGTGCA 151912 Query 3883 TTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTT 3942 ||| |||||| |||| || || || || || || || ||||||||||| |||||||| | Sbjct 151913 TTTCATGATGTCTGATGGAGGATTTTCAGTAGAAGGACAAGAAAATATACAAGAAATTCT 151972 Query 3943 ATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGG 4002 || ||| | ||||| | ||||||||| | | ||||||||||| || || ||||| Sbjct 151973 TTCAAAACAATTGTATCTTTGTCAATGTCTGGTGGCATTGATGATTGTAAGAGAGGGTGG 152032 Query 4003 TCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTT 4062 ||||| ||| | ||||| || || | |||||||| ||||||||||||||||| ||||| Sbjct 152033 TCATTTTGTGACAAAATTATTTGACCTTTTTACACCCTTTAGTGCTGGTTTAGTTTATTT 152092 Query 4063 GATGTATAGAT-CTTTTAATCGTA-TTTGTATTTTCAAACCACATTCATCGCGACCGGCC 4120 |||||| | | |||| || | | ||||||||||||||||| | || || |||| || Sbjct 152093 AATGTATCGCTGCTTTGAA--GAAGTTTGTATTTTCAAACCAAACTCTTCTAGACCAGCA 152150 Query 4121 AATTCTGAAAGATATTT 4137 ||||| ||| | || || Sbjct 152151 AATTCAGAACGTTACTT 152167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276534863407177