Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq257 125 4e-24 seq92 122 5e-23 seq1499 105 3e-18 seq434 105 3e-18 seq377 105 3e-18 >seq257 Length=1347240 Score = 125 bits (138), Expect = 4e-24 Identities = 87/98 (89%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||| |||| | ||||| | || ||||||||||| |||||||||| ||||||||||||| Sbjct 618021 ATAAAATTTAAAAAAAGT-AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTT 617963 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||| ||||||||||||||||||||| Sbjct 617962 ATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 617925 >seq92 Length=412666 Score = 122 bits (134), Expect = 5e-23 Identities = 86/98 (88%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 33019 AAAAAAAAAGTTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 32960 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGACGATTGTG 11542 |||| |||||||||||||||||||||| || |||||| Sbjct 32959 CTCTAACCAACTGAGCTAATGGGCCGTTGA-AATTGTG 32923 Score = 116 bits (128), Expect = 2e-21 Identities = 86/101 (85%), Gaps = 5/101 (5%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAA-----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 ||| || ||||||| ||| |||||||||| |||||||||| |||||||||||| Sbjct 69439 AATGAAAAAAAAATAAAAAAACTTTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGT 69380 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||||||||||||||| |||||||||||||||||||| || Sbjct 69379 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCATC 69339 >seq1499 Length=229007 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| ||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 216735 TTGGCTCATGAGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 216676 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||| ||| Sbjct 216675 CTGAGCTAATGAGCC 216661 >seq434 Length=462004 Score = 105 bits (116), Expect = 3e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| ||| || | | ||||||| | ||||||||| |||||||||| ||||||||| Sbjct 203753 AAAAATA-AAGTGACAAAAAAT-ATTCTGGCCCATGGGGGGATCGAACCCACGACCTTCG 203696 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||| ||||||||||||||| Sbjct 203695 CGTTATTAGCACGACGCTCTAACCATCTGAGCTAATGGGCC 203655 >seq377 Length=2700735 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| ||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1434075 TTGGCTCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 1434134 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||| ||| Sbjct 1434135 CTGAGCTAATGAGCC 1434149 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261473483889484