Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq377 183 5e-42 seq647 179 6e-41 >seq377 Length=2700735 Score = 183 bits (202), Expect = 5e-42 Identities = 205/273 (75%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | | || |||||||||||||| |||||||||||||| ||| Sbjct 1367455 GCAAAGCGTCATAGAAAGGTTTTGCGTGATAACATCCAAGGTATCACCAAGCCAGCCATC 1367514 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||||||||| || || |||||| | ||||||||| | || ||||| | Sbjct 1367515 CGTCGTCTTGCTCGTCGTGGCGGTGTGAAGCGTATTTCTGGATTGATATACGAAGAAACG 1367574 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||| | ||| | | | |||||||| ||||| | ||| || || Sbjct 1367575 CGTGGTGTATTGAAGGTGTTCTTGGAAAACGTTATCCGAGATGCCGTAACCTACACTGAA 1367634 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | || ||||| || | ||||| | ||||| || || ||||||||||| Sbjct 1367635 CACGCCAAGAGGAAAACTGTGACGGCTATGGACGTAGTCTACGCCTTAAAACGTCAAGGA 1367694 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 | | ||||||| ||||| |||||| |||| Sbjct 1367695 AGAACTCTTTATGGGTTTGGTGGTTAAT-TTCT 1367726 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | | || |||||||||||||| |||||||||||||| ||| Sbjct 1348676 GCAAAGCGTCATAGAAAGGTTTTGCGTGATAACATCCAAGGTATCACCAAGCCAGCCATC 1348617 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| || || ||| | ||||||||| | || ||||| | Sbjct 1348616 CGTCGTCTTGCTCGTCGTGGTGGTGTGAAACGTATTTCTGGATTGATTTACGAAGAAACG 1348557 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||| | | | |||||||| || || | ||| || || Sbjct 1348556 CGTGGTGTACTGAAGGTGTTCTTGGAAAACGTTATCCGAGACGCCGTAACCTACACTGAA 1348497 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | || ||||| || | |||||| | ||||| || |||||||||||||| Sbjct 1348496 CACGCCAAGAGGAAAACTGTGACGGCTATGGATGTAGTCTACGCCTTGAAACGTCAAGGA 1348437 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | |||| |||||||| |||||| Sbjct 1348436 AGAACTCTTTACGGTTTTGGTGGTTAAT 1348409 >seq647 Length=2209093 Score = 179 bits (198), Expect = 6e-41 Identities = 202/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | ||||| ||||| |||||||| ||||| || ||||| || Sbjct 705359 GCGAAGCGTCATAGAAAGGTACTTCGTGATAATATCCAAGGTATCACGAAACCAGCAATT 705418 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||||||||||||||| || || || | ||||| ||| | || || || | | Sbjct 705419 CGTCGCTTGGCTCGTCGTGGTGGTGTTAAACGCATATCTGGCTTGATTTACGAGGAAACT 705478 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC-TTTCCACTATACCGA 16611 |||| ||| || || | ||||| | | ||| || | |||||| || || || ||||| Sbjct 705479 CGTGGTGTCTTAAAAGTTTTCCTAGAAAACGTCATTCGTGATGCGGTTACA-TACACCGA 705537 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||||||| |||||||| || | |||||| |||| || || |||| | ||||| Sbjct 705538 GCACGCTAAACGGAAGACTGTAACGGCTATGGATGTCGTATACGCTCTGAAGAGACAAGG 705597 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||||||||||||| ||||| Sbjct 705598 ACGTACTCTTTATGGTTTTGGAGGTTAA 705625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070117367387