Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq2372 113 6e-20 >seq2372 Length=84335 Score = 113 bits (124), Expect = 6e-20 Identities = 205/295 (69%), Gaps = 5/295 (2%) Strand=Plus/Minus Query 114520 CTAGAAGGTATTCGTTTTTATGTATCATTTGCATGTTCATTTGCATTTGGTGAGAATAAA 114579 || |||| |||||| |||||||| ||||| || || ||||| |||| || || Sbjct 71733 CTTGAAGCTATTCGATTTTATGTTAGCTTTGCCTGCTCGTTTGCCTTTGCCGAACGCGAA 71674 Query 114580 TTGATGGAAGGTAATGCGAAAATTATTTCTCTCATTGCAAGAGATGAATCTCAGCACATG 114639 || |||||||| ||||| ||||||||| || ||||| | |||||| ||| ||| | Sbjct 71673 TTAATGGAAGGAAATGCCAAAATTATTAAACTGATTGCCCGCGATGAAGCTCTTCACCTT 71614 Query 114640 ACTATTACTCAAAATATTATTAATAAGTG--GAAG-GCTGGCGATGATCCAGACATGGTT 114696 || ||||||| ||| ||||||| || | || | || ||||||||||| |||| | Sbjct 71613 ACCGGTACTCAATTTATGATTAATACGTTACGCAGTGGTGAAGATGATCCAGAAATGGCT 71554 Query 114697 GAAATCGC-AAAGCAAGAAGAGAATAATGTTTATGATATGTTTAAAAAATGTGTTGAAGA 114755 || ||||| |||| | | || | || |||||| ||||| || | | | Sbjct 71553 GATATCGCTAAAGAGTGCCAACAACAGTG-CTATGATCTGTTTGTCCAAGCAGCAAATCA 71495 Query 114756 AGAGATTATCTGGGCAGATTACCTGTTCCGAGATGGATCGATGATTGGTCTCAAT 114810 ||||| ||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 71494 AGAGAAAGATTGGGCGGATTACCTGTTTTCAGGCGGATCAATGATCGGTCTAAAT 71440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627924364073600