Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1274 102 9e-17 >seq1274 Length=440581 Score = 102 bits (112), Expect = 9e-17 Identities = 155/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 21286 ACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTC 21345 ||| || | ||||| | ||||||||| || |||||||| |||||||||||||| | | Sbjct 123705 ACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATATTGACACATAAGTGT 123764 Query 21346 ACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGA 21405 ||| ||||| || |||| || ||||| | ||||| || ||||| || ||| || Sbjct 123765 ACAGTTCATTCCTATCATTTGAACAGGTAAAGCTTCCGTTAAAAATTCTTGTTCAATTTT 123824 Query 21406 GACGGCTTCAACAATTATATTTATTATCCTAGAT-GTACTAGGG---GGATACAATAATT 21461 |||||| || ||| || | | | || ||| | | | || ||||||| | Sbjct 123825 GACGGCATCTTTAATAATTGATGTGACCC--GATCGCAAGATGGTTTTTGTACAATA--T 123880 Query 21462 GTTTAAACATCAAACATGCAAAATCACAATGCAAACC 21498 |||| |||||||||||||| ||||||||||| || || Sbjct 123881 GTTTGAACATCAAACATGCGAAATCACAATGTAATCC 123917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531863839543160