Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq418 156 5e-33 seq1274 102 1e-16 >seq418 Length=3833963 Score = 156 bits (172), Expect = 5e-33 Identities = 193/262 (74%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 62250 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62309 || ||| || ||| ||||| ||| || || || |||| ||| | | ||| || || Sbjct 2670178 GAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTTTCAGTC 2670119 Query 62310 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 62369 | | ||| | | ||| ||||| || |||||||| ||||||||||| ||||| | | Sbjct 2670118 AGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCA 2670059 Query 62370 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62429 ||||||||||||||||| ||||| | || ||||||||||| || ||||| ||||| ||| Sbjct 2670058 TAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGAT 2669999 Query 62430 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTAT 62487 || || |||||||| || | |||||| |||||||| || ||||| | ||||| | Sbjct 2669998 GCCGTTGGCATAGGGGCGATTAATAAAGAATTTCTAACTCC--ATGTTTAGCAATTTTTT 2669941 Query 62488 CTTTTAGAGGTTCCCAATTCCA 62509 |||| ||| | ||| ||||| Sbjct 2669940 CTTTCAGAATTGTCCAGTTCCA 2669919 Score = 145 bits (160), Expect = 1e-29 Identities = 219/307 (71%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 63289 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63348 |||||||||||||||| | || | | ||||| | |||||| ||||| || ||||| | Sbjct 2668758 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 2668699 Query 63349 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63408 | | |||| || | ||| |||||||| ||||| | |||| ||| || ||||| || | Sbjct 2668698 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 2668639 Query 63409 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG--CTTCC 63466 |||| | ||||||||| | ||| || |||| |||| ||||| || ||| | | || Sbjct 2668638 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTGGTGTGCC 2668581 Query 63467 ACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 || || |||||| | || | | || || || || || || ||| || | || Sbjct 2668580 TCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTAATAAGTG 2668522 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 | |||| |||||| || ||||| || || |||||||||||||| |||| | |||| || Sbjct 2668521 CACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAA 2668462 Query 63586 AACAGCT 63592 |||| || Sbjct 2668461 AACAACT 2668455 Score = 118 bits (130), Expect = 1e-21 Identities = 237/347 (68%), Gaps = 12/347 (3%) Strand=Plus/Minus Query 62736 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 62795 ||||| ||||| |||||| | ||| || ||| ||||| ||| ||||||||||| Sbjct 2669505 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCATGAACCGGATAATAATTC 2669446 Query 62796 ATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTG 62852 | ||| |||||||| | | ||| | | |||||| |||| || | |||||| Sbjct 2669445 ACATCGATAATTTTGTCTAAATTACAAGTAACAATT--TTTGTT-ACTTTTCGCAGTTTT 2669389 Query 62853 AGAAAATCAAATCGCCCAT--CTA----TTACAAACATGTTCAAGGCAACAGATGCCAGA 62906 |||||||||| | || || ||||||||||||||| || | || || | | Sbjct 2669388 TCAAAATCAAATGTCTGATTACTGGAGTTTACAAACATGTTCACTGCGATTGAAGCTAAA 2669329 Query 62907 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 62966 || || || || | |||| | | | |||||||| || || || || | |||||| Sbjct 2669328 TTGCATACAGCGATTTCATCTGGACTGGAATATTGTACGATTTCTGTACACAAATTACTG 2669269 Query 62967 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63026 | ||||| || ||||||||||| ||||| || ||||| ||| |||||||| Sbjct 2669268 CTTTTGATTGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATAAAGC 2669209 Query 63027 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63073 ||| | ||||| || ||||||| ||||| | | ||| ||| |||| Sbjct 2669208 ATGTAAGGAGTTCCTGTTTCAACTTGAGAAACAAGAATAGCTGTCCA 2669162 Score = 100 bits (110), Expect = 4e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 ||||||||||| || | ||||| | ||| ||| | | ||||| || || ||||| Sbjct 2668383 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 2668324 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 | ||| || | | |||||| || || |||||| || ||||| |||||| Sbjct 2668323 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGAATG 2668264 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63770 | ||||| || | |||||||||||| || ||||||||||| | || | |||||| Sbjct 2668263 GCAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACAACTTTCCCTTGTATTTTT 2668204 Query 63771 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63830 || || || | |||| | || ||||||||||| || || || |||||||| || Sbjct 2668203 AATAAATAACTTCTTTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAGTCTCTATCA 2668144 Query 63831 TAAATAAT 63838 ||||| || Sbjct 2668143 TAAATTAT 2668136 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/179 (73%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 63124 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 63183 ||||||| | ||| || || || |||||||||| | |||||| |||||| | Sbjct 2669018 GTGTATAGAGAGCTTCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTG 2668959 Query 63184 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63243 ||||||| || ||||| | || | ||| |||||||||||||| |||||||| |||| Sbjct 2668958 GACACATTAAAGACCATACACCATTATCGAAAACTCGTTTCATAAAAAGATCAGGTATCC 2668899 Query 63244 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT--ATTCTTTTTA 63299 | | ||| ||| |||| ||||| | ||||| ||| || || ||||| ||| || ||| Sbjct 2668898 ATAAAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 2668841 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 62571 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62630 ||| |||| || || |||| |||| || |||| ||||||||||| |||||||||||| Sbjct 2669756 CCTTCATAGGTTTCATATGTACCTTTCTCTGCAGCAAGTTCACAACTAGCCTCTAATGCA 2669697 Query 62631 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 62690 || ||||| | || || || || | |||| || | |||||||||| || ||||| Sbjct 2669696 CCATAATATAATGTCTCAAATATTTGGATATTAAGTTTTTGTGCTTCCTCACTTTCAAAC 2669637 Query 62691 GGATA 62695 ||||| Sbjct 2669636 GGATA 2669632 >seq1274 Length=440581 Score = 102 bits (112), Expect = 1e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 33100 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATAT 33159 ||| ||| |||| | | || ||||| | || |||||||| || || ||||| |||||| Sbjct 123691 TTACAAACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATAT 123750 Query 33160 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAAT 33219 ||| | | ||| ||||||||||| | || ||| || | ||| | || | |||| Sbjct 123751 TGACACATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCTTCCGTTAAAAAT 123810 Query 33220 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGA 33279 ||||||||||| || |||||| | ||||| ||| | || || | ||| Sbjct 123811 TCTTGTTCAATTTTGACGGCATCTTTAATAATTGATGTGACCCGATCGCAAGATGGTTTT 123870 Query 33280 TGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33328 || | | |||||| |||||||||||||||||||| || || | |||| Sbjct 123871 TGTACAATATGTTTGAACATCAAACATGCGAAATCACAATGTAATCCCT 123919 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847 ||||||| | ||| ||||| || || |||||||||||||| || || ||||||||||| | Sbjct 124742 CTTTAGAAAGATCCACTTCCTCAACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 124801 Query 33848 TCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 ||| |||||| |||| || || || | ||| |||||| ||||||| Sbjct 124802 GCCAAATGTCAGGCCATTGAATAGGAAAGACAACGAATCTACGTGGATTT 124851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622903912956440