Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_007023.1 Length=180500 Score E Sequences producing significant alignments: (Bits) Value seq2372 176 5e-39 seq2331 172 6e-38 seq1913 109 6e-19 seq3883 104 3e-17 >seq2372 Length=84335 Score = 176 bits (194), Expect = 5e-39 Identities = 338/495 (68%), Gaps = 15/495 (3%) Strand=Plus/Minus Query 41798 TACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTT---GCG 41854 |||||||||| |||||||| || ||||| ||||| || || |||||| |||| | | Sbjct 74100 TACCTACGCCAATTATGGCGGGGGTGCGCACTCCAACTCGCCAGTTT---AGTTCGTGTG 74044 Query 41855 TAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT---GCGATCG 41911 || ||||||| | | |||| || | || | ||||| ||| | || || | Sbjct 74043 TATTGATTGAGTGCGATGATAGTCTTGACTCAATTAATGCC---ACCGCGAGCGCTATTG 73987 Query 41912 TGAAGTATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGG 41971 | || || | ||||||||||| || || || ||||||| || | || || || | | Sbjct 73986 TTAAATACGTATCACAACGCGCTGGAATTGGCATTAATGCCGGTAAGATCCGTGCCTTAG 73927 Query 41972 GTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATA 42031 | | ||||| ||||| ||||| | ||||| || || || || | || | Sbjct 73926 GAAGTCCGATCCGCGGTGGCGAAGCGTTCCATACTGGTTGTATTCCATTTTATAAGTACT 73867 Query 42032 TTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGT 42091 | || ||||| || ||||||||||| ||||| || || || || || || |||||| | | Sbjct 73866 TCCAAACAGCTGTGAAATCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTAT 73807 Query 42092 ATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTG 42151 ||||||| | |||||||| ||||| |||||| | |||| || || ||| ||| Sbjct 73806 TTTATCCGTTATGGCATTTAGAAGTAGAAAACTTATTGGTGCTACGCAATAACCGTGGTA 73747 Query 42152 TTGAGAATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATA 42211 |||| | || || | || || | |||||||| || || |||| | || ||||| Sbjct 73746 TTGAAGAAAATCGCGTGCGCCATTTAGATTATGGGGTACAAATTAATAAATTAATGTACC 73687 Query 42212 AGCGTTTAATCAATAACGATTACATCACACTGTTCAGCCCTGACGTTGCAAATGATCGCC 42271 |||||||||| || ||||| | ||| | ||||| |||||| | || |||| | Sbjct 73686 AGCGTTTAATTAAAAACGAAAATATCTCGCTGTTTAGCCCTTCTGATGTCCCTGAT---C 73630 Query 42272 TGTATGATGCTTTCT 42286 |||||| ||||||| Sbjct 73629 TGTATGCGGCTTTCT 73615 Score = 91.5 bits (100), Expect = 2e-13 Identities = 224/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 43517 AGCCAATGTTCTTCGGTGAAGATACTGGG---GTTGCCCGATATGAAGAACAAAAACATC 43573 ||||||||||||| ||| || ||| | || || || ||||| | |||||| || Sbjct 72296 AGCCAATGTTCTTAGGTCAAC---CTGTGAACGTAGCACGCTATGATCAGCAAAAATATG 72240 Query 43574 GCGTATTCGAAACTTTGACTGAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGG 43633 | || |||| |||| |||||||||||| || || || ||||| || ||||| |||| Sbjct 72239 AGATGTTTGAAAAATTGATTGAAAAACAACTCTCCTTTTTTTGGCGTCCAGAAGAGGTGG 72180 Query 43634 ATCTGTCGATCGACCGTATGCAGTATGCAAAAATGCCGGAACACGAGAAAATCATTTTTG 43693 || | | | || ||||| | ||| | | || ||||| || ||| || ||| Sbjct 72179 ATATTACTAAAGATCGTATTGATTATCAGCAGCTACCTGAACATGAAAAACATATCTTTA 72120 Query 43694 ATTCTAACCTGCAATATCAAACCCTGTTAGATACCATTCAGGGACGTGGCCCTAACCTGG 43753 ||| | ||||||||||| | ||||| ||||||| |||||| | || || ||| Sbjct 72119 TCAGTAATTTAAAATATCAAACCTTATTAGACTCCATTCAAGGACGTAGTCCAAATGTGG 72060 Query 43754 CGTTTCTCCCGATTGCCTCTGATGTTTCAA-TGGAAACGTGGATCGAAACATGGGCTTTC 43812 | || | || | ||| || | || | ||||| ||| | ||||| ||| | || Sbjct 72059 CATTATTACCTCTAATTTCT-ATCCCTGAATTAGAAACATGGGTAGAAACTTGGTCATTT 72001 Query 43813 AGTGAAACAATTCATAGCCGCAGTTATACACACATT 43848 ||| || |||||| ||| ||||| || ||| Sbjct 72000 TCTGAGACTATTCATTCGCGCTCCTATACGCATATT 71965 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 44107 GTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTTACCTTTACGTTCAACTTTGCC 44166 ||||| || || ||||| ||||| || ||||| ||| ||| |||| ||||||| Sbjct 71742 GTCAATGCGCTTGAAGCTATTCGATTTTATGTTAGCTTTGCCTGCTCGTTTGCCTTTGCC 71683 Query 44167 GAACAGGGCAAGATGGAAGGTAACGCAAAGATCATGCGTCTGATTGCCCGTGATGAAGCA 44226 |||| | |||||||| || || || || || ||||||||||| |||||||| Sbjct 71682 GAACGCGAATTAATGGAAGGAAATGCCAAAATTATTAAACTGATTGCCCGCGATGAAGCT 71623 Query 44227 CTTCATCAGAAAGGTACTCAAAGCAAGA-TCCGAC-TCTGGCAGATGGGTAAAGATGACC 44284 ||||| | | ||||||||| | || | || | |||| ||| ||||||| | Sbjct 71622 CTTCACCTTACCGGTACTCAATTTATGATTAATACGTTACGCAG--TGGTGAAGATGATC 71565 Query 44285 CAGAAATGGCAGAAATCGC 44303 |||||||||| || ||||| Sbjct 71564 CAGAAATGGCTGATATCGC 71546 >seq2331 Length=68774 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 51876 TCGCAAAACGTGAAGTTGATATTGAGTTTCAACCGACTGTTAAAGTTGAAGGTGGACAGC 51935 ||| | | |||||||| |||||| | ||| ||| ||||||| ||||||||||| | Sbjct 23857 TCGAATATCGTGAAGTACCTATTGATGTCGCACCAACTATTAAAGTAGAAGGTGGACAAC 23798 Query 51936 ACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCTGTGAAACATCCTGAGA 51995 || |||| |||||||| ||||||| ||||| | ||||| || || ||||| ||||| | Sbjct 23797 ACTTAAATGTGAATGTATTACGTCGTGAAACGTTAGAAGACGCGGTTAAACACCCTGAAA 23738 Query 51996 AGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTTAATGCACTGACTC 52055 | ||||| || ||||| || || ||||| |||||||| || || |||||| || | || | Sbjct 23737 ACTACCCGCAATTAACTATTCGTGTTTCTGGTTATGCGGTGCGTTTTAATTCATTAACGC 23678 Query 52056 CAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATGTAA 52105 |||||||||| || |||||||| || | || ||||| ||||| ||| Sbjct 23677 CAGAACAACAACGTGACGTTATTGCTCGTACTTTTACAACTAGCATTTAA 23628 >seq1913 Length=212763 Score = 109 bits (120), Expect = 6e-19 Identities = 362/543 (67%), Gaps = 20/543 (4%) Strand=Plus/Plus Query 155730 AACGAGAACGCGAACAAACAC-GCAAGGGTATTCCCGACACAGCGCAATTTGCTGGCGGG 155788 ||||| || || || ||| | | || | |||||| || |||||| |||| | || || Sbjct 31795 AACGAAAATGCTAATAAAGATAGTAAAGTTATTCCT-ACTCAGCGCGATTTATTAGCAGG 31853 Query 155789 TATTGTAGCGAAGCATTTCGCCC-GTAATCATATCCTTCCGAAACATATCGTAGAAGCGC 155847 ||| || || || |||| || | ||| ||||| | || ||| | || |||| Sbjct 31854 TATCGTTGCTAAACATTATGCTAAGCAAT-ATATCTTACCTAAAGAAATTTCTATTGCGC 31912 Query 155848 ATGACTCCGGCGACATCCACTATCATGATCTGGATTACAG-CCCGTTCACGCCATACACA 155906 |||| || || || || ||||||||||||||||| ||| || | | || | Sbjct 31913 ATGATCGTGGTGAAATTCATTATCATGATCTGGATTATGCTCCCTTTTTCCCTATGTTTA 31972 Query 155907 AACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCA 155966 | |||| || | ||||| | || ||||| | || || || || ||||| || || Sbjct 31973 A-CTGCATGCTAATTGATTTAGATGGAATGCTAACCAAGGGTTTTAAAATGGGAAATGCT 32031 Query 155967 GACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCA 156026 || || ||||| || |||||||| ||| || ||| | | |||||||| | || Sbjct 32032 GAAATTGAACCGCCTAAATCAATTTCAACTGCCACCGCTGTAACCGCACAGATTATAGCC 32091 Query 156027 CAGATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAACGTG--GATAAAGTGCTGG 156084 || | || || || || || || ||| || || ||| ||| |||| |||| Sbjct 32092 CAAGTAGCCAGCCATATTTATGGTGGCACCACCATT--AATCGTATTGATGAAGTTCTGG 32149 Query 156085 CTCCGTATGCA--GAAATGACATATGAAAAGCATGTTAAGGAT-GCTAAAAAGTATAAAA 156141 || | || | |||| | |||||||| ||| | | || || || ||| ||| Sbjct 32150 CTAAATTTGTATCGAAAAGT--TATGAAAAACATCGTC-GTATAGCCGAAGAGTGGCAAA 32206 Query 156142 TTTCGTTAGATCGTACA-TATGCGATGGAAAAGACTGAAAAAGATGTGTT-TGATGCTTT 156199 || | | | |||| | | || || | | | ||||||||||| ||||| |||||| || Sbjct 32207 TTCC-TGATATCGAAAACTACGCTAAGTCACGTACTGAAAAAGA-GTGTTATGATGCATT 32264 Query 156200 CCAATCGTATGAATACGAAGTTAACACGCTGCATACTGCCAACGGACAAACACCTTTCGT 156259 ||||||| ||||| ||||| || ||||| |||||||| || ||||| || ||||| || Sbjct 32265 TCAATCGTTAGAATATGAAGTCAATACGCTACATACTGCGAATGGACAGACCCCTTTTGT 32324 Query 156260 TAC 156262 ||| Sbjct 32325 TAC 32327 >seq3883 Length=158444 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 51919 AGTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGC 51978 |||||||||||| |||||||| || || || || || ||| ||||| | |||||| Sbjct 116377 AGTTGAAGGTGGTCAGCACCTTAATGTTAACGTATTAAATCGTGAAACATTATTAGATGC 116436 Query 51979 TGTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCG 52038 || || ||||||| ||||| ||||| ||||| || || ||||| |||||||| || || Sbjct 116437 AATGGAAAATCCTGAAAAGTATCCACAATTAACTATTCGTGTTTCTGGTTATGCCGTACG 116496 Query 52039 CTTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAG 52098 ||||| | | ||| ||| ||||| ||||| || | | || ||||| || Sbjct 116497 TTTTAACTCTTTAACTAAAGAGCAACAAAAAGACGTCATTACTCGGACGTTTACTCAATC 116556 Query 52099 CATGTAATGTCTATTGA 52115 ||||||| || |||| Sbjct 116557 AATGTAATAACTGTTGA 116573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577431872914400