Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq320 102 2e-16 >seq320 Length=1637695 Score = 102 bits (112), Expect = 2e-16 Identities = 160/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 || ||| | || || ||||||||| || ||||| ||| | || || || | | ||| Sbjct 153401 TTCCCATTGCTAACTACAAAGCGAGTATTTTGGAGGGGTGTAGTGGAGGAGTTGTTATGG 153460 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAA-ATGTAAAAATTTGGGA 111433 |||||| | ||| |||||||| || ||| || ||||| |||| | || ||||| Sbjct 153461 TTTATTAGAGGATCGACAAATGCCAAAGAA-TTAAGTCAAAAGGATGTCCACATATGGGA 153519 Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC-GACAACGAAGAAGGTG 111492 || ||| | ||||| || || ||||| || ||| ||| | || | ||||||| | Sbjct 153520 TGCAAACAGTTCACGCGAGTTCCTAGACTCTTGTGG-CTTCACAGATAGGAAAGAAGGAG 153578 Query 111493 ATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 || | ||||| ||||| |||||||||||| | |||| ||||||| Sbjct 153579 ATTTAGGACCTGTTTATGGATTTCAATGGAGACACTATGGTGCA 153622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303260769047138