Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq739 100 2e-16 seq129 96.9 3e-15 seq503 86.0 5e-12 >seq739 Length=1399493 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||| ||||| || || ||||||||||||||| | ||| || | Sbjct 7031 AATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATTACCTTGGAAGTTGAAGCATC 7090 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | | || || |||||| || ||||| || | || || || Sbjct 7091 TGACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCA 7150 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | | || | ||| ||||||||| ||||||||| | ||| | | |||||||| Sbjct 7151 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7210 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||||| |||||||| || | ||| | || |||||| | || ||||||| Sbjct 7211 CATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGAA 7260 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||| ||||| || || ||||||||||| ||| | ||| || | Sbjct 7973 AATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATCACCTTGGAAGTTGAAGCATC 8032 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | | || || |||||| || ||||| || | || || || Sbjct 8033 TGACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCA 8092 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | | || | ||| |||||||| ||||||||| | ||| | | |||||||| Sbjct 8093 GCAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTATAA 8152 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| || |||||||| || | ||| | || |||||| | || ||||||| Sbjct 8153 CATCCAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCGTGGAGGAA 8202 >seq129 Length=1828789 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| || ||||| ||||| | || || |||||||| ||| | ||| || | Sbjct 1158593 AAGATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCA 1158652 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || ||| ||| | | |||||| ||||| ||||||||||| | || |||| Sbjct 1158653 TCAGATACTATTGAAAATGTAAAAGCTAAAATCCAGGATAAAGAAGGAATTCCACCTGAT 1158712 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||| | ||||||| ||| || || ||||| ||||||| || || | |||||| Sbjct 1158713 CAGCAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTAT 1158772 Query 115463 AACATTCAAAAAG 115475 || |||||||||| Sbjct 1158773 AATATTCAAAAAG 1158785 >seq503 Length=216272 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || || || || || |||||||| || || | ||| || | | Sbjct 160881 ATGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 160940 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | |||||| ||||||| ||||| ||||| | || ||||| Sbjct 160941 GACACGATAGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGAATTCCGCCAGATCAA 161000 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGAT-GAC-AAAACCATGGCCGATTATA 115463 || ||| | |||| |||||| |||||| | |||||| ||| | || || | ||||| | Sbjct 161001 CAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGCACACTAT--CAGATTACA 161058 Query 115464 ACATTCAAAAAGAGTCTACT 115483 ||||||| || || || ||| Sbjct 161059 ACATTCAGAAGGAATCAACT 161078 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| ||||| || || |||||||| || || | ||| ||| | Sbjct 161635 AATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACGATAACTCTGGAAGTTGAGGCTTC 161694 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| | | || || || ||| ||||||||||| | || ||||| Sbjct 161695 AGACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCA 161754 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || ||| | || | || || |||||||| ||||| | || || | || ||||| Sbjct 161755 ACAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAA 161814 Query 115465 CATTCAAAAAGAGTCTACT 115483 ||||||||||| || ||| Sbjct 161815 TATTCAAAAAGAATCGACT 161833 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| ||||| || || || ||||| || || | ||| |||| | Sbjct 162555 AATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTC 162614 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| | | | | || || || ||| ||||||||||| | || ||||| Sbjct 162615 AGACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCA 162674 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || ||| | || | || || |||||||| || || | || || |||| ||||| Sbjct 162675 ACAGAGATTGATCTTCGCTGGTAAACAATTGGAGGACGGTCGCACGCTGTCCGACTATAA 162734 Query 115465 CATTCAAAAAGAGTCTACTATACAT 115489 |||||||| ||||| ||| | ||| Sbjct 162735 TATTCAAAAGGAGTCAACTCTTCAT 162759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425315182811080