Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq10 192 4e-44 seq129 123 2e-23 seq570 122 6e-23 seq1397 111 1e-19 seq2682 109 4e-19 seq503 109 4e-19 seq739 96.9 2e-15 >seq10 Length=1335514 Score = 192 bits (212), Expect = 4e-44 Identities = 282/399 (71%), Gaps = 0/399 (0%) Strand=Plus/Plus Query 6152 ATCGACCACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTA 6211 ||| | ||| ||||||| | || ||||| |||||||| || ||||| |||||||| Sbjct 375505 ATCAATCACCATGGGGAGTGTCAATGTAAACCGTAATGTCAGCGATGCGTTTTACCGCTA 375564 Query 6212 CAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCAT 6271 |||||||| || ||| ||||| || ||||| |||||||| ||||| || || || || Sbjct 375565 TAAAATGCCACGGATCCAAGCCAAAGTGGAGGGCAAGGGAAATGGTATCAAGACAGTAAT 375624 Query 6272 TGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATA 6331 || || ||| || ||||| || || | || | ||||| ||||| || || ||||| Sbjct 375625 CGTGAATATGGTCGATGTCGCCAAAGCCATTGGGAGACCTGCTACCTATCCTACCAAATA 375684 Query 6332 TTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGT 6391 |||||| || || ||||| || ||||| || || ||| ||||||||| | ||||| || Sbjct 375685 TTTCGGCTGTGAGCTTGGAGCGCAGACCCAATTCGATTTCAAAAACGAAAGATTCATTGT 375744 Query 6392 TAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTT 6451 || |||||||| | || | || | || || | | || || || || ||||| | Sbjct 375745 AAATGGATCGCACGATGCTTCGAAATTACAAGATCTGTTGGATGGATTCATCCGCAAATA 375804 Query 6452 TGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAA 6511 ||| | || | || |||||||| || ||||| ||| | || || | |||| | Sbjct 375805 TGTATTATGCCCGGCTTGCGATAATCCCGAGACAGAGTTGATGGTCAGCTCGAAGAAAGG 375864 Query 6512 CACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGG 6550 ||||| || || || || ||||| ||||| || || || Sbjct 375865 AACCATTTCGCAAGGATGTAAAGCATGCGGCTATCACGG 375903 >seq129 Length=1828789 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38130 TTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATT 38189 ||||||||||| ||||| |||| | |||| | || || ||||| ||||| ||||| || Sbjct 1158783 TTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATA 1158724 Query 38190 AGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGG 38249 || ||||| ||||| | || | |||||||| ||| ||||| || ||||| | Sbjct 1158723 AGACGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTTTCA 1158664 Query 38250 ACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAAT 38309 | ||||||| ||| ||||| | || || |||||||| ||||| |||||||| ||| Sbjct 1158663 ATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAAAT 1158604 Query 38310 ATCTGCATGTT 38320 |||||||| || Sbjct 1158603 ATCTGCATCTT 1158593 >seq570 Length=7012 Score = 122 bits (134), Expect = 6e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 543 CTCTCTCTTCAAAGTTCTTTTCAACTTTTCCTCACGGTACTTGTTCGCTATCGGTCTCGT 602 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 603 GGTTGTATTTAGCCTTA 619 >seq1397 Length=1722 Score = 111 bits (122), Expect = 1e-19 Identities = 78/89 (88%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 25906 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAAT 25960 ||||||||||||| |||||||||||||| |||||||| || || ||||| |||||| Sbjct 284 CCGTTCCCTTGGCAGTGGTTTCGCTAGAAAGTAGATACGGACAGAGGGAATCTTGTTAAT 343 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGAC 25989 || |||||||||||||||||||||||||| Sbjct 344 CCATTCATGCGCGTCACTAATTAGATGAC 372 >seq2682 Length=416 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||| | ||| | || | ||||||||| |||||||||||||| || | Sbjct 90 CATT-CCTCCTCTGAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAGT 148 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | |||| ||| |||| || |||||||| || || || || | | |||||||||| Sbjct 149 CTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCACTCTCTGTTGATCGG 208 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||||| ||| ||| || ||| ||||| | | ||| ||| | | Sbjct 209 GTGGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCT 268 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||||| || || ||||| || || | ||| || ||||| || ||||| Sbjct 269 CAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 320 >seq503 Length=216272 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||| ||| | || | ||| || || |||||||| |||||||||| Sbjct 162322 CATT-CCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAAT 162264 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | || | || || | ||| ||||| ||||| || | | |||||| || | Sbjct 162263 CAGAGAGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCTG 162204 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||||||||| ||||||| || ||||| | | ||||| | || Sbjct 162203 GAGGAATTCCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCTATCGTATCGGAAGCTT 162144 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | ||| |||||||| || || | ||| |||||||| || ||||| Sbjct 162143 CAACTTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 162092 Score = 102 bits (112), Expect = 5e-17 Identities = 165/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||| ||| | || | ||| || || |||||||| |||||||||| Sbjct 160655 CATT-CCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAAT 160597 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | || | || || |||||||| || ||||| || | | ||||| || | Sbjct 160596 CAGAAAGTGTGCGCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGTTGGTCTG 160537 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||||| || ||| ||| ||||| |||| | ||||| | || Sbjct 160536 GAGGAATACCTTCTTTATCTTGAATCTTTGCTTTCACGTTCTCAATTGTATCGGAAGCTT 160477 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||||| | || |||||||| || |||| || || ||||| ||||||||| || Sbjct 160476 CAACTTCAAGGGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCATGATT 160421 Score = 102 bits (112), Expect = 5e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||||||||| ||||||||||||||| || || |||| || |||| || ||||| Sbjct 162759 ATGAAGAGTTGACTCCTTTTGAATATTATAGTCGGACAGCGTGCGACCGTCCTCCAATTG 162700 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||| || || || || | | |||||||||| || | |||||||| ||| ||| || Sbjct 162699 TTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTT 162640 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| ||||| | || ||| ||| | || ||||||| || || ||||| || || Sbjct 162639 GGCCTTGACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGAGTTATCGTTTTCCCAGT 162580 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 | |||||| || || || ||||| Sbjct 162579 AAGGGTTTTTACAAAAATTTGCAT 162556 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||| |||||||||||||| || || |||| ||| |||| || |||||| Sbjct 160855 TGAAGAGTCGATTCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGT 160796 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || | | |||||||||| || | |||||||| ||| ||| || Sbjct 160795 TTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTG 160736 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| ||||| | | ||| ||| |||||||||| || || ||||| || || Sbjct 160735 GCCTTGACATTTTCAATAGTGTCTGATGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTA 160676 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | ||| || ||||| || ||||| Sbjct 160675 AGGGTCTTGACGAAAATTTGCAT 160653 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||| || ||||||||||| || || |||| ||| |||| || |||||| Sbjct 162066 TGAAGAGTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGT 162007 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || | | |||||||| | || | |||||||| ||| ||| || Sbjct 162006 TTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTG 161947 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| ||||| | | ||| ||| | |||||||||| || || ||||| || || Sbjct 161946 GCCTTAACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTA 161887 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | ||| || ||||| || ||||| Sbjct 161886 AGGGTCTTGACGAAAATTTGCAT 161864 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||| || ||||||||||| || || |||| ||| |||| || |||||| Sbjct 161838 TGAAGAGTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGT 161779 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || | | |||||||| | || | |||||||| ||| ||| || Sbjct 161778 TTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTG 161719 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| ||||| | | ||| ||| | |||||||| | || || ||||| || || Sbjct 161718 GCCTTGACATTTTCAATAGTGTCTGAAGCCTCAACTTCCAGAGTTATCGTTTTTCCTGTA 161659 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | |||||| || || || ||||| Sbjct 161658 AGGGTTTTTACAAAAATTTGCAT 161636 >seq739 Length=1399493 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||| || ||||| || ||| ||| || ||||| || ||||| || | | | | | || Sbjct 7016 CAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATC 6957 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 |||| ||||| || ||||| || | || || || || | || | ||||||||||| Sbjct 6956 TTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTGTC 6897 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 || || |||||||||| | || || | ||||||||| | |||||||| Sbjct 6896 TTGGATCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGT 6837 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| || || ||||| || ||||| ||||||||||| Sbjct 6836 TTTCCCTGTTAAGGTCTTAACGAAGATCTGCATGTT 6801 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||| || ||||| || ||| ||| || ||||| || ||||| || | | | | | || Sbjct 7472 CAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATC 7413 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 |||| |||||| || ||||| || | || || || || | || | || |||||||| Sbjct 7412 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7353 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 || || ||||||||||| | || || | ||| ||||| || ||||| || Sbjct 7352 TTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGT 7293 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || | ||||| || || |||||||| Sbjct 7292 TTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7260 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||| || ||||| || ||| ||| || || || || ||||| || | | | | | || Sbjct 7700 CAATACTAAATGGAGCGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATC 7641 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 |||| |||||| || ||||| || | || || || || | || | || |||||||| Sbjct 7640 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7581 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 || || ||||||||||| | || || | ||| ||||| || ||||| || Sbjct 7580 TTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGT 7521 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || | ||||| || || |||||||| Sbjct 7520 TTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7488 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||| || ||||| || ||| ||| || || || || ||||| || | | | | | || Sbjct 7928 CAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTTCCATC 7869 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 |||| |||||| || ||||| || | || || || || | || | || |||||||| Sbjct 7868 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7809 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 || || ||||||||||| | || || | ||| ||||| || ||||| || Sbjct 7808 TTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTAATGGT 7749 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || | ||||| || || |||||||| Sbjct 7748 TTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334924507222529