Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_008208.1 Length=161475 Score E Sequences producing significant alignments: (Bits) Value seq1913 82.4 8e-11 >seq1913 Length=212763 Score = 82.4 bits (90), Expect = 8e-11 Identities = 226/335 (67%), Gaps = 10/335 (3%) Strand=Plus/Minus Query 36180 ATACCCACAAACTCTTCGGATAACTGACATCTTTGCTG-AGTCGTGGTTACCACAGCTCG 36238 ||| ||||| || | || |||| |||| |||| ||| | ||||| |||||||| || | Sbjct 33498 ATAGCCACATACACGACGAGTAACCGACA-CTTTACTGGAATCGTGATTACCACAACTTG 33440 Query 36239 GGCAACTAAATCCTTTCGAGGTGCATTTGAATTCACCGTCAAAACCGCATTCATAACATT 36298 | ||| | || ||||| || || |||||||| | |||| ||||||||||| | Sbjct 33439 GACAAGTGAACCCTTTACTAGTACAAGAAAATTCACCACTATAACCACATTCATAACACT 33380 Query 36299 TATCAACAGGTGTGTTTGTTCCAAAAT-AGGAAAGATTTTCCATCGC-GTAATCCCAAAT 36356 ||||| ||| || || || ||| ||| ||||| | | || || |||||||| | Sbjct 33379 CATCAATAGGGGTATTCGTCCCATAATAAGGAACG--CGGCTATAGCTATAATCCCATAC 33322 Query 36357 TTGCTCAAGGGCCTCGAGATTGTTTCGCATATT-GGGTAGTTCGACATAGCTGATATGCC 36415 | || | || | ||||| | ||||||| ||||| ||| |||| | ||| | Sbjct 33321 ATCTTCTAACGCTTTAAGATTATGCTGCATATTAGGGTA-TTCACCATAACAGATGAAGC 33263 Query 36416 CACCTGATGCAATCCAATGGAATTCTTTTTCGGCATCTATTTTGTCATACGGGTTCAAC- 36474 |||| ||| ||| | | | ||||||| |||| ||| | ||| ||| ||||| Sbjct 33262 CACCATTTGCGATCATAGGATAGGCTTTTTCAAACTCTAATTTTTGATAAGGG-TCAACT 33204 Query 36475 TCGGCATCAACAGGAATATGGAAGCTATTCGTATA 36509 | || ||| | |||||| ||||||||||| Sbjct 33203 TTTTTCTCCACATCCAGATGGAAACTATTCGTATA 33169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516556103313400