Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq418 161 1e-34 seq1274 114 2e-20 >seq418 Length=3833963 Score = 161 bits (178), Expect = 1e-34 Identities = 194/262 (74%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 62105 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62164 || ||| || ||| ||||| ||| || || || |||| ||| | | ||| || || Sbjct 2670178 GAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTTTCAGTC 2670119 Query 62165 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 62224 | | ||| | | ||| ||||| || |||||||| ||||||||||| ||||| | | Sbjct 2670118 AGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCA 2670059 Query 62225 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62284 ||||||||||||||||| ||||| | ||| ||||||||||| || ||||| ||||| ||| Sbjct 2670058 TAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGAT 2669999 Query 62285 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTAT 62342 || || |||||||| || | |||||| |||||||| || ||||| | ||||| | Sbjct 2669998 GCCGTTGGCATAGGGGCGATTAATAAAGAATTTCTAACTCC--ATGTTTAGCAATTTTTT 2669941 Query 62343 CTTTTAGAGGTTCCCAATTCCA 62364 |||| ||| | ||| ||||| Sbjct 2669940 CTTTCAGAATTGTCCAGTTCCA 2669919 Score = 140 bits (154), Expect = 4e-28 Identities = 218/307 (71%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 63144 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63203 |||||||||||||||| | || | | ||||| | |||||| ||||| || ||||| | Sbjct 2668758 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 2668699 Query 63204 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63263 | | |||| || | ||| |||||||| ||||| | |||| ||| || ||||| || | Sbjct 2668698 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 2668639 Query 63264 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAG--CTTCC 63321 |||| | ||||||||| | |||||| ||| |||| || || || ||| | | || Sbjct 2668638 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTGGTGTGCC 2668581 Query 63322 ACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63380 || || |||||| | || | | || || || || || || ||| || | || Sbjct 2668580 TCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTAATAAGTG 2668522 Query 63381 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 63440 | |||| |||||| |||||||| || || ||||| |||||||| |||| | |||| || Sbjct 2668521 CACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAA 2668462 Query 63441 AACAGCT 63447 |||| || Sbjct 2668461 AACAACT 2668455 Score = 125 bits (138), Expect = 9e-24 Identities = 267/392 (68%), Gaps = 14/392 (4%) Strand=Plus/Minus Query 62591 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 62650 ||||| ||||| |||||| | ||| || ||| ||||| ||| ||||||||||| Sbjct 2669505 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCATGAACCGGATAATAATTC 2669446 Query 62651 ATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTG 62707 | ||| |||||||| | | ||| | | |||||| |||| || | |||||| Sbjct 2669445 ACATCGATAATTTTGTCTAAATTACAAGTAACAATT--TTTGTT-ACTTTTCGCAGTTTT 2669389 Query 62708 AGAAAATCAAATCGCCCAT--CTA----TTACAAACATGTTCAATGCAACAGATGCCAGA 62761 |||||||||| | || || ||||||||||||||| ||| | || || | | Sbjct 2669388 TCAAAATCAAATGTCTGATTACTGGAGTTTACAAACATGTTCACTGCGATTGAAGCTAAA 2669329 Query 62762 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 62821 || || || || | |||| | | | |||||||| || || || || | |||||| Sbjct 2669328 TTGCATACAGCGATTTCATCTGGACTGGAATATTGTACGATTTCTGTACACAAATTACTG 2669269 Query 62822 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 62881 | ||||| || ||||||||||| ||||| || ||||| ||| |||||||| Sbjct 2669268 CTTTTGATTGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATAAAGC 2669209 Query 62882 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 62941 ||| | ||||| || ||||||| ||||| | | ||| ||| |||| | ||| | | Sbjct 2669208 ATGTAAGGAGTTCCTGTTTCAACTTGAGAAACAAGAATAGCTGTCCATAAATCTCTCG-C 2669150 Query 62942 TTTATTATAGATTTGTATCTCTTTTCTCTTTC 62973 || | | | || | ||| ||||||||| ||| Sbjct 2669149 TTGAATCT-GACGTTTATATCTTTTCTCATTC 2669119 Score = 102 bits (112), Expect = 1e-16 Identities = 132/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 62979 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCG 63038 ||||||| | ||| || || || |||||||||| || |||||| |||||| | Sbjct 2669018 GTGTATAGAGAGCTTCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTG 2668959 Query 63039 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63098 ||||||| || ||||| | || | ||| |||||||||||||| |||||||| |||| Sbjct 2668958 GACACATTAAAGACCATACACCATTATCGAAAACTCGTTTCATAAAAAGATCAGGTATCC 2668899 Query 63099 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT--ATTCTTTTTA 63154 | | ||| ||| |||| ||||| | ||||| ||| || || ||||| ||| || ||| Sbjct 2668898 ATAAAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 2668841 Score = 100 bits (110), Expect = 4e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||||||||| || | ||||| | ||| ||| | | ||||| || || ||||| Sbjct 2668383 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 2668324 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 | ||| || | | |||||| || || |||||| || ||||| |||||| Sbjct 2668323 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGAATG 2668264 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 | ||||| || | |||||||||||| || ||||||||||| | || | |||||| Sbjct 2668263 GCAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACAACTTTCCCTTGTATTTTT 2668204 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685 || || || | |||| | || ||||||||||| || || || |||||||| || Sbjct 2668203 AATAAATAACTTCTTTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAGTCTCTATCA 2668144 Query 63686 TAAATAAT 63693 ||||| || Sbjct 2668143 TAAATTAT 2668136 Score = 82.4 bits (90), Expect = 1e-10 Identities = 123/174 (71%), Gaps = 8/174 (5%) Strand=Plus/Minus Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| |||| || || |||| |||| || |||| ||||||||||| |||||||||||| Sbjct 2669756 CCTTCATAGGTTTCATATGTACCTTTCTCTGCAGCAAGTTCACAACTAGCCTCTAATGCA 2669697 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 || ||||| | || || || || | |||| || | ||| |||||| || ||||| Sbjct 2669696 CCATAATATAATGTCTCAAATATTTGGATATTAAGTTTTTGTGCTTCCTCACTTTCAAAC 2669637 Query 62546 GGATA----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595 ||||| ||| || |||| || ||||| | || |||| ||||| || Sbjct 2669636 GGATATCGCATTAAAAGGAAT----GCATCTGCAAGACCCTGAATTCCAATCCC 2669587 >seq1274 Length=440581 Score = 114 bits (126), Expect = 2e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 32920 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 32979 ||||| | | ||||||||||||||| | |||||||| || || | ||||| |||| Sbjct 124446 TATCTGTGATATATGTATCAATCAACATGGAGTACATTTCTGAGTGCACATTTTCTATGG 124505 Query 32980 CCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 33039 | | |||||| || ||||| || | |||||||| | |||||||| || |||||||| Sbjct 124506 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCCTGACTAAATCGTT 124565 Query 33040 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33099 | | | ||| ||||| || ||||| ||| || ||||| || || || ||||| || Sbjct 124566 CGACAAGATTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATA 124625 Query 33100 TAAAATATTTTTCGTC 33115 | |||| ||| || || Sbjct 124626 TGAAATGTTTCTCATC 124641 Score = 113 bits (124), Expect = 6e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 ||||||| | ||||||||| || || |||||||||||||| || || ||||||||||| | Sbjct 124742 CTTTAGAAAGATCCACTTCCTCAACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 124801 Query 33205 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 33264 ||| |||||| | ||||||| ||||| | ||| |||||| |||||||| | || | Sbjct 124802 GCCAAATGTCAGGCCATTGAATAGGAAAGACAACGAATCTACGTGGATTTTCTTTCAGTA 124861 Query 33265 TTGGTTC 33271 |||||| Sbjct 124862 ATGGTTC 124868 Score = 109 bits (120), Expect = 7e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 32457 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATAT 32516 ||| ||| |||| | | || ||||| | || |||||||| || |||||||| |||||| Sbjct 123691 TTACAAACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATAT 123750 Query 32517 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 32576 ||| | | ||| ||||||||||| | || ||| || | ||| | || | |||| Sbjct 123751 TGACACATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCTTCCGTTAAAAAT 123810 Query 32577 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TG 32634 ||||||||||| ||| || ||| | ||||| ||| | || || | || | Sbjct 123811 TCTTGTTCAATTTTGACGGCATCTTTAATAATTGATGTGACCCGATCGCAAGATGGTTTT 123870 Query 32635 GATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 32685 |||||| |||||| |||||||||||||||||||| || |||| |||| Sbjct 123871 TGTACAAT--ATGTTTGAACATCAAACATGCGAAATCACAATGTAATCCCT 123919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633587970496400