Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq503 132 4e-26 seq129 132 4e-26 seq739 125 6e-24 seq2682 116 3e-21 seq1081 89.7 4e-13 >seq503 Length=216272 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || ||| | ||||| | ||||| || | || Sbjct 160425 ATGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACCCTTGAAGTTGAAGCTTCC 160484 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| |||| ||||| | ||| || |||||||| ||||| || ||||| Sbjct 160485 GATACAATTGAGAACGTGAAAGCAAAGATTCAA-GATAAAGAAGGTATTCCTCCAGACCA 160543 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || ||||| || |||||||| ||||||| ||||| | |||||||| Sbjct 160544 ACAGAGGTTGATCTTTGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACAA 160603 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| ||||| ||||| || || ||| | || || | || |||||||||| Sbjct 160604 TATACAAAAGGAATCAACCCTGCATCTTGTACTTCGTCTGAGAGGAGGAA 160653 Score = 122 bits (134), Expect = 8e-23 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || ||| | |||||| | ||||| || | || Sbjct 162092 ATGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 162151 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || ||||||||| ||| ||||||||||| ||||| || ||| Sbjct 162152 GATACGATAGAA--AATGTAAAAGCAAAAATTCAA-GACAAAGAAGGAATTCCTCCAGAC 162208 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | || ||||| || || ||| | ||||||| ||||| | |||||| Sbjct 162209 CAACAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTCTCTGATTAC 162268 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| ||||| ||||| || || ||| | || || | || |||||||||| Sbjct 162269 AATATACAAAAGGAATCAACCCTGCATCTTGTACTTCGTCTGAGAGGAGGAA 162320 Score = 120 bits (132), Expect = 3e-22 Identities = 158/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || | || || ||| | || || | ||||||||| | || Sbjct 162555 AATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTC 162614 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||||||||| |||| | || || | ||| || |||||||| |||||||| | Sbjct 162615 AGACACTATCGAAAATGTCA---AGGCCAAGATTCAG-GATAAAGAAGGTATTCCACCCG 162670 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | |||||| | | || || || || |||||||| || || | |||||| || ||| | Sbjct 162671 ATCAACAGAGATTGATCTTCGCTGGTAAACAATTGGAGGACGGTCGCACGCTGTCCGACT 162730 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | ||||||||||| || || || || ||| | || || Sbjct 162731 ATAATATTCAAAAGGAGTCAACTCTTCATCTTGTTCT 162767 Score = 113 bits (124), Expect = 4e-20 Identities = 171/242 (71%), Gaps = 16/242 (7%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || | || || ||| | || || | ||||||||| | || Sbjct 162319 AATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTC 162378 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||||||||| |||| | || || | ||| || |||||||| ||||| || | Sbjct 162379 AGACACTATCGAAAATGTCA---AGGCCAAGATTCAG-GATAAAGAAGGTATTCCGCCAG 162434 Query 25114 ACC--------AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGT 25165 | | ||||| | | |||||||| || |||||| | ||||||| ||||| | Sbjct 162435 ATCGCCGGATCAACAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGCACACT 162494 Query 25166 GGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||| || ||||| || || || | || || | || |||||||| Sbjct 162495 ATCAGATTACAATATTCAGAAGGAATCGACTCTTCACCTTGTTCTTCGTCTCAGAGGAGG 162554 Query 25226 AA 25227 || Sbjct 162555 AA 162556 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || | || || ||| | || || | ||||| ||| | || Sbjct 161635 AATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACGATAACTCTGGAAGTTGAGGCTTC 161694 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||||| || |||| | || || | ||| || |||||||| ||||| || | Sbjct 161695 AGACACTATTGAAAATGTCA---AGGCCAAGATTCAG-GATAAAGAAGGTATTCCGCCAG 161750 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | |||||| | | || || || || |||||||| ||||| | ||||| || || | Sbjct 161751 ATCAACAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACT 161810 Query 25174 ACAATATTCAAAAAGAATCCACGCTACA 25201 | ||||||||||||||||| || || || Sbjct 161811 ATAATATTCAAAAAGAATCGACTCTTCA 161838 Score = 104 bits (114), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| | || || ||| | || || | ||||| ||| | || Sbjct 160652 AATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCATC 160711 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||||| || |||| | || || | ||| || |||||||| |||||||| | Sbjct 160712 AGACACTATTGAAAATGTCA---AGGCCAAGATTCAG-GATAAAGAAGGTATTCCACCCG 160767 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | |||||| | | || || || || |||||||| ||||| | ||||| || || | Sbjct 160768 ATCAACAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACT 160827 Query 25174 ACAATATTCAAAAAGAATCCACGCTACA 25201 | ||||||||||| ||||| || || || Sbjct 160828 ATAATATTCAAAAGGAATCGACTCTTCA 160855 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || ||| | || || | ||||| ||| | || Sbjct 161864 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCA 161923 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| | || | ||| || |||||||| ||||| || || || Sbjct 161924 GACACTATTGAAAATGTTAAGGCCAAGATTCAG-GATAAAGAAGGTATTCCGCCAGATCA 161982 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | || || || || |||||||| ||||| | ||||| || || || || Sbjct 161983 ACAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAA 162042 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||||||||||||| || || || Sbjct 162043 TATTCAAAAAGAATCGACTCTTCA 162066 >seq129 Length=1828789 Score = 132 bits (146), Expect = 4e-26 Identities = 147/193 (76%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || |||||||| |||||| ||||||| | ||||| || | || Sbjct 1158596 ATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCATCA 1158655 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| || || |||||||| ||||||||||| Sbjct 1158656 GATACTATTGAA--AATGTAAAAGCTAAAATCCAG-GATAAAGAAGGAATTCCACCTGAT 1158712 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || |||||||||| || || ||||| ||||||| || ||| || ||||| Sbjct 1158713 CAGCAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTAT 1158772 Query 25176 AATATTCAAAAAG 25188 ||||||||||||| Sbjct 1158773 AATATTCAAAAAG 1158785 >seq739 Length=1399493 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| || || || ||| | || || | ||||| || | ||| Sbjct 6804 ATGCAGATCTTCGTTAAGACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGCTTCT 6863 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| |||| || ||| ||||||||||| ||||| || ||||| Sbjct 6864 GACACAATAGAGAATGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGACCAG 6923 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| |||||||| ||||||||| | ||| | ||||| || Sbjct 6924 CAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTATAAC 6983 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| ||||| |||||||| |||||||| | || || | ||||||| Sbjct 6984 ATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGAA 7032 >seq2682 Length=416 Score = 116 bits (128), Expect = 3e-21 Identities = 167/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || ||| | || || | ||||| ||| | || Sbjct 320 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCA 261 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| | || || | ||| || |||||||| |||||||| || Sbjct 260 GACACTATTGAAAATGTCA---AGGCCAAGATTCAG-GATAAAGAAGGTATTCCACCCGA 205 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | || || || || |||||||| ||||| | ||||| || || || Sbjct 204 TCAACAGAGAGTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTA 145 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||||| ||||| || || ||| | || || | || |||||||||| Sbjct 144 TAATATTCAAAAGGAATCGACTCTTCATCTTGTTCTTCGTCTCAGAGGAGGAA 92 >seq1081 Length=102446 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| |||||||| || ||||| | | || ||||| || ||||||||||| |||| | | Sbjct 20042 AGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAACAATTAGAGGATGGTAG 19983 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 ||| | ||||| |||||||| || ||||| || |||| ||||||||| | |||| Sbjct 19982 AACTTTATCAGATTATAATATTCAGAAGGAATCTACATTACACTTAGTGCTACGTTTAAG 19923 Query 25220 AGGAGGA 25226 ||| ||| Sbjct 19922 AGGTGGA 19916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433298641892585