Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_008515.1 Length=165890 Score E Sequences producing significant alignments: (Bits) Value seq2372 158 1e-33 seq2331 127 2e-24 seq3883 95.1 1e-14 seq1791 84.2 2e-11 >seq2372 Length=84335 Score = 158 bits (174), Expect = 1e-33 Identities = 315/460 (68%), Gaps = 10/460 (2%) Strand=Plus/Plus Query 138780 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138839 ||| || | ||| | ||| || |||||||| | ||| || | ||| |||||||| | || Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 138840 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138899 |||||| | || | | ||||| ||||| |||||||| | |||||| | | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATAC 73810 Query 138900 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATG 138959 || || || || || || | || || || || || ||||| ||||| || || || | Sbjct 73811 CGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTA 73870 Query 138960 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 139019 || |||| |||||| |||||||||| |||| || || ||| | ||| Sbjct 73871 CTTATAAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAA 73930 Query 139020 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 139079 |||||| ||| |||| | ||||| |||||||||||||||| || | |||| |||||| Sbjct 73931 GGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAAT 73990 Query 139080 TG---AAGCGGAAGCCTTATTGATAGACTTCAATGAATCTCCT-GC-CTCAATAACAACA 139134 | |||| || ||| || || |||| || | || | || |||||| | ||| Sbjct 73991 AGCGCTCGCGGTGGC---ATTAATTGA-GTCAA-GACTATCATCGCACTCAATCAATACA 74045 Query 139135 CATGAACTAAACTGTCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAA 139194 || ||||||||||| ||||||||||| || || |||||||| || || || | ||| Sbjct 74046 CACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAA 74105 Query 139195 ATCTGTCGAGTAGATACTGCTTCATAAAAACGAATAACGT 139234 || | || || | || ||||||||||| ||| || Sbjct 74106 ATTTTAAAGGTGGAAATCGCATCATAAAAACGTTTAATGT 74145 Score = 86.0 bits (94), Expect = 7e-12 Identities = 126/176 (72%), Gaps = 7/176 (4%) Strand=Plus/Plus Query 136698 AATAATATATTGGGTGCCTTTAAGGTGAAGCTGTTCATCGCGTGCAATGAACTTCATAAT 136757 ||| ||| |||| || || |||||||||| ||||||||| ||||| | || ||||| Sbjct 71593 AATCATAAATTGAGTACCGGTAAGGTGAAGAGCTTCATCGCGGGCAATCAGTTTAATAAT 71652 Query 136758 CTTGGCATTACCTTCCATGATTTCCATGTTCTTATGG--AAGTTAAAGGTACATGCAAAA 136815 |||||||| |||||||| | ||| |||| || ||| ||| | || ||||| Sbjct 71653 TTTGGCATTTCCTTCCATTAATTCGC-GTTC----GGCAAAGGCAAACGAGCAGGCAAAG 71707 Query 136816 GATACATAAAAACGAATAGCTTCTAAGGCATTAATAACGTGTAAACAGAGGTAAAG 136871 |||||||| ||||||||||| | ||||| | ||||||||| ||||| Sbjct 71708 CTAACATAAAATCGAATAGCTTCAAGCGCATTGACGCTCATTAAACAGAGATAAAG 71763 >seq2331 Length=68774 Score = 127 bits (140), Expect = 2e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 60629 GTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60688 || || |||||||| |||||||| || || ||||| || || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 60689 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60748 |||||||| || ||||| || || | ||||| || ||||| || || ||||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 60749 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAATTTTAA 60806 || | ||||||||||| | || || || || | |||||| |||||||| | ||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTACTTTAA 23818 >seq3883 Length=158444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 60629 GTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60688 || || || |||| || ||||| || || || ||| | ||||||||| || || Sbjct 116550 GTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTACG 116491 Query 60689 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60748 |||||||| || ||||| || || | || ||||| ||||| |||| | | ||||||| Sbjct 116490 GCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATCT 116431 Query 60749 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAA 60800 | ||||||||| | |||||||| || ||||| ||||||||||||| Sbjct 116430 AATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAA 116379 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 68591 ATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GC 68649 |||||||||| | | ||||||||| | ||||||||| ||||||| |||||||||| || Sbjct 16639 ATTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGC 16580 Query 68650 CATTATACGATATCCGCA 68667 ||||||||||| ||||| Sbjct 16579 CATTATACGATGCCCGCA 16562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530683121594000