Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1274 120 3e-22 seq344 120 3e-22 seq343 120 3e-22 seq279 116 4e-21 >seq1274 Length=440581 Score = 120 bits (132), Expect = 3e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || |||||||| || |||| || |||||||| || || ||||| || || || | ||| Sbjct 124454 ATATATGTATCAATCAACATGGAGTACATTTCTGAGTGCACATTTTCTATGGCGACTTGA 124513 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || |||||||| | || || || | || ||||| ||| ||||| || || ||| Sbjct 124514 AAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCCTGACTAAATCGTTCGACAAGA 124573 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || ||||| || || ||||| || || ||||| || || || | ||| ||| |||||| Sbjct 124574 TTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATATGAAATGT 124633 Query 93542 TTCTCATCA 93550 ||||||||| Sbjct 124634 TTCTCATCA 124642 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 |||| |||||||| ||||| || ||||||||||| |||||||| |||||||| ||||| | Sbjct 124742 CTTTAGAAAGATCCACTTCCTCAACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 124801 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698 ||| ||||| | ||||||| ||||| | || || | | || || ||||| |||| Sbjct 124802 GCCAAATGTCAGGCCATTGAATAGGAAAGACAACGAATCTACGTGGATTTTCTTTCAGTA 124861 Query 93699 ACGGCTCTAGTTGTGGGTCAAA 93720 | || |||| || ||| | ||| Sbjct 124862 ATGGTTCTAATTCTGGATTAAA 124883 Score = 100 bits (110), Expect = 3e-16 Identities = 167/238 (70%), Gaps = 9/238 (4%) Strand=Plus/Plus Query 93111 AACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTT 93170 ||||| | |||| || || | |||||| || ||||| | ||||| | | |||| || Sbjct 124111 AACCT-CATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTT 124169 Query 93171 TCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAA 93230 | || ||||| || || | ||||||||||| ||| || ||||||||||| || |||| Sbjct 124170 TTTTCAGCCAGAAAATAGCGGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAA 124229 Query 93231 ATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG----ATCCATTTTAAAGCC 93286 |||| || | |||||| | ||| || || | | || || ||||| ||||| ||| Sbjct 124230 ATGCAACCACACGTTCAGGAAA---TGTGGCACT-CTCATGATTTATCCAATTTAATGCC 124285 Query 93287 CAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 || | ||||||||| || || |||| |||| || || || || || | |||| Sbjct 124286 CAGTTAGCTTTTTTCGCAACGCATGGTAAATTTTCAATCGCATTGAACAGAAAGTCTC 124343 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 92888 TTATAATACTTTTCACCGATCAACTC-GTACAATAATCTATCAGCTACAAATTCTATGTA 92946 ||| || |||||||| | || || ||| | |||||||||||| |||||||| || || Sbjct 123691 TTACAAACCTTTTCACAGCCTAATTCTGTA-AGTAATCTATCAGCAACAAATTCGATATA 123749 Query 92947 CTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAA 93006 ||| |||| | ||| |||||||||| | | ||||||| ||| || || || || Sbjct 123750 TTGACACATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCTTCCGTTAAAAA 123809 Query 93007 ATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTT 93066 |||| || ||| ||||| ||||| | ||| | | || | | | |||||| Sbjct 123810 TTCTTGTTCAATTTTGACGGCATCTTTAATAATTGATGTGACCCGATCGCAAGATGGTTT 123869 Query 93067 TTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACC 93114 |||||| | || ||| |||| || || || || || |||||| || Sbjct 123870 TTGTACAATATGTTTGAACATCAAACATGCGAAATCACAATGTAATCC 123917 >seq344 Length=1429177 Score = 120 bits (132), Expect = 3e-22 Identities = 78/85 (92%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTG 126325 ||||||||||||| |||||||||||||||| ||||| |||||||||| | ||||||||| Sbjct 915166 CAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGATTGGGAGCGTG 915107 Query 126326 GGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||| ||||| Sbjct 915106 GGTTCGAACCCCACACCTGGCAAAT 915082 >seq343 Length=200853 Score = 120 bits (132), Expect = 3e-22 Identities = 86/98 (88%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAG 126321 |||| |||||||||||| |||||||||||||||| ||||| |||||||||||| ||||| Sbjct 69764 ACAGCTAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCTCTGGGAG 69705 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGG 126359 |||||||||||||||||||| | ||||| || |||| Sbjct 69704 CGTGGGTTCGAACCCCACACTTAGCAAATATTTTTTGG 69667 >seq279 Length=760071 Score = 116 bits (128), Expect = 4e-21 Identities = 81/91 (89%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAGCGTGGG 126327 |||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||| Sbjct 581024 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCTCTGGGAGCGTGGG 581083 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTG 126358 |||||||||||||| | ||||| || ||| Sbjct 581084 TTCGAACCCCACACTTAGCAAATATTTTTTG 581114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556822105135160