Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq739 140 3e-28 seq129 132 4e-26 seq503 125 6e-24 seq2682 95.1 1e-14 >seq739 Length=1399493 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || ||||| || ||||| || ||||| | ||||||||||| ||| | Sbjct 6801 AACATGCAGATCTTCGTTAAGACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGCT 6860 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | ||| || || |||||||| || |||||||| || || Sbjct 6861 TCTGACACAATAGAGAATGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGAC 6920 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||| | || ||||| ||||||||| |||| ||| | || | || ||||| Sbjct 6921 CAGCAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTAT 6980 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| ||||| ||||| | |||||||| ||| || | |||||||| Sbjct 6981 AACATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGG 7030 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || ||||| | || | ||||| ||| | | Sbjct 7032 ATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATTACCTTGGAAGTTGAAGCATCT 7091 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || |||||||| ||||| ||||||||||| || || || Sbjct 7092 GACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCAG 7151 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| |||||||| |||| ||| | || | || ||||| ||| Sbjct 7152 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 7211 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||| ||||| | |||||||| ||| || | |||||||| Sbjct 7212 ATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGG 7258 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || |||||||| | || | ||||| ||| | | Sbjct 7260 ATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTCT 7319 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || |||||||| ||||||||||| || || || Sbjct 7320 GACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAG 7379 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| |||||||| |||| ||| | || | || ||||| ||| Sbjct 7380 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 7439 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||| ||||| | |||||||| ||| || | |||||||| Sbjct 7440 ATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGG 7486 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || ||||| |||| | ||||| ||| | | Sbjct 7974 ATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATCACCTTGGAAGTTGAAGCATCT 8033 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || |||||||| ||||| ||||||||||| || || || Sbjct 8034 GACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCAG 8093 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||||||| |||| ||| | || | || ||||| ||| Sbjct 8094 CAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTATAAC 8153 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| ||||| | |||||||| ||| || | || ||||| Sbjct 8154 ATCCAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCGTGGAGG 8200 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || |||||||| | || | ||||| ||| | | Sbjct 7488 ATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTCT 7547 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || |||||||| ||||||||||| || || || Sbjct 7548 GACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAG 7607 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| |||||||| |||| ||| | || | || ||||| ||| Sbjct 7608 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 7667 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| ||||| | |||||||| ||| || | |||||||| Sbjct 7668 ATCCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGG 7714 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || |||||||| | || | ||||| ||| | | Sbjct 7716 ATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTCT 7775 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || |||||||| ||||||||||| || || || Sbjct 7776 GACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAG 7835 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| |||||||| |||| ||| | || | || ||||| ||| Sbjct 7836 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 7895 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| ||||| | |||||||| ||| || | || ||||| Sbjct 7896 ATCCAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCGTGGAGG 7942 >seq129 Length=1828789 Score = 132 bits (146), Expect = 4e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| |||||||| || |||||||| |||| |||||||| ||| | Sbjct 1158593 AAGATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCA 1158652 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | ||| ||||| || || || || || |||||||| ||| Sbjct 1158653 TCAGATACTATTGAAAATGTAAAAGCTAAAATCCAGGATAAAGAAGGAATTCCACCTGAT 1158712 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||||||||||| ||||| || || || || || ||| || || | || ||||| Sbjct 1158713 CAGCAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTAT 1158772 Query 22396 AACATTCAAAAAG 22408 || |||||||||| Sbjct 1158773 AATATTCAAAAAG 1158785 >seq503 Length=216272 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || ||||| |||| |||||||| ||| | || Sbjct 162092 ATGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 162151 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||||||| || || ||||| || || ||| Sbjct 162152 GATACGATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGAATTCCTCCAGACCAA 162211 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || || || | || ||| ||||| |||| |||||||| Sbjct 162212 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTCTCTGATTACAAT 162271 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| ||||| ||| | ||| | || | || || | ||||| Sbjct 162272 ATACAAAAGGAATCAACCCTGCATCTTGTACTTCGTCTGAGAGGAGG 162318 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || ||||| |||| |||||||| ||| | || Sbjct 160881 ATGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 160940 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| |||||||||||| ||||| || ||||| || |||||| Sbjct 160941 GACACGATAGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGAATTCCGCCAGATCAA 161000 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || ||||| | || ||| ||||| | || ||||||||| Sbjct 161001 CAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGCACACTATCAGATTACAAC 161060 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || ||||| || Sbjct 161061 ATTCAGAAGGAATCAAC 161077 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| | || || |||||| | ||||| |||||||| | | Sbjct 162556 ATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTCA 162615 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || ||||| || || || |||||||||||||||||| Sbjct 162616 GACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAA 162675 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||||| || ||||| ||||| | ||||| || || Sbjct 162676 CAGAGATTGATCTTCGCTGGTAAACAATTGGAGGACGGTCGCACGCTGTCCGACTATAAT 162735 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||||| || || || | ||| | ||| Sbjct 162736 ATTCAAAAGGAGTCAACTCTTCATCTTGTT 162765 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| | || || |||||| | ||||| ||||| || | | Sbjct 161636 ATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACGATAACTCTGGAAGTTGAGGCTTCA 161695 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || ||||| || || || |||||||| || |||||| Sbjct 161696 GACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAA 161755 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||||| || || || ||||| | || || || || Sbjct 161756 CAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAAT 161815 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||||||||| || Sbjct 161816 ATTCAAAAAGAATCGAC 161832 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || |||||| | ||||| ||||| || | | Sbjct 160653 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCATCA 160712 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || ||||| || || || |||||||||||||||||| Sbjct 160713 GACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAA 160772 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||||| || || || ||||| | || || || || Sbjct 160773 CAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAAT 160832 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| ||||| || Sbjct 160833 ATTCAAAAGGAATCGAC 160849 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/205 (69%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| | || || |||||| | ||||| |||||||| | | Sbjct 162320 ATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTCA 162379 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTC--------CAC 22330 || || | || || |||| || ||||| || || || ||||||| | | Sbjct 162380 GACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCGC 162439 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | |||||||| | | || ||||| || ||||| | || ||| ||||| | || | Sbjct 162440 CGGATCAACAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGCACACTATCAG 162499 Query 22391 ATTACAACATTCAAAAAGAATCCAC 22415 ||||||| ||||| || ||||| || Sbjct 162500 ATTACAATATTCAGAAGGAATCGAC 162524 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || |||||| | ||||| ||||| || | | Sbjct 161864 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCA 161923 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || ||||| || || || |||||||| || |||||| Sbjct 161924 GACACTATTGAAAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAA 161983 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||||| || || || ||||| | || || || || Sbjct 161984 CAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAAT 162043 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||||||||| || Sbjct 162044 ATTCAAAAAGAATCGAC 162060 >seq2682 Length=416 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || |||||| | ||||| ||||| || | | Sbjct 320 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCA 261 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || ||||| || || || |||||||||||||||||| Sbjct 260 GACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAA 201 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||||| || || || ||||| | || || || || Sbjct 200 CAGAGAGTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAAT 141 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||||| ||||| || | ||| | ||| Sbjct 140 ATTCAAAAGGAATCGACTCTTCATCTTGTT 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419699563296835