Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq739 194 3e-44 seq503 161 2e-34 seq2682 147 4e-30 seq129 127 4e-24 >seq739 Length=1399493 Score = 194 bits (214), Expect = 3e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||||||||| | |||||| || || |||||||||||||| |||||||||||||| | Sbjct 7716 TTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGGATGTTATAATCTG 7657 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || || |||||||||| || || || || || || | | || ||||| || | Sbjct 7656 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7597 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| || || |||||||| ||||| ||||| || ||| || ||||| | | ||||| Sbjct 7596 GAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTA 7537 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||||| |||||||| || || || || ||||| || ||||||||| Sbjct 7536 CTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCATT 7487 Score = 190 bits (210), Expect = 4e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||||||||| | |||||| || || |||||||||||||| || ||||||||||| | Sbjct 7488 TTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTG 7429 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || || |||||||||| || || || || || || | | || ||||| || | Sbjct 7428 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7369 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| || || |||||||| ||||| ||||| || ||| || ||||| | | ||||| Sbjct 7368 GAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTA 7309 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||||| |||||||| || || || || ||||| || ||||||||| Sbjct 7308 CTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCATT 7259 Score = 190 bits (210), Expect = 4e-43 Identities = 182/233 (78%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68230 AATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAAT 68289 || ||||||| ||||| | |||||| || || || ||||||||||| ||||||||||||| Sbjct 8205 AACTTCCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAAT 8146 Query 68290 CGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG 68349 | || || || || |||||||||| ||| || || || || || | | || ||||| | Sbjct 8145 CTGAAAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTG 8086 Query 68350 GTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATT 68409 | ||||| || || ||||| ||||| || ||||| || ||| || ||||| | || || Sbjct 8085 GAGGAATACCCTCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTT 8026 Query 68410 CTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | ||||||||||||||||||||||| || || || || || || ||||||||| Sbjct 8025 CAACTTCCAAGGTGATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCATT 7973 Score = 185 bits (204), Expect = 2e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||||||||| | |||||| || || |||||||||||||| || ||||||||||| | Sbjct 7260 TTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTG 7201 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || || |||||||||| || || || || || || | | || ||||| || | Sbjct 7200 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7141 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| || || ||||| ||||| || ||||| || ||| || ||||| | || ||| | Sbjct 7140 GAATACCCTCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAA 7081 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||||| ||||||||||| || || || || || || ||||||||| Sbjct 7080 CTTCCAAGGTAATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCATT 7031 Score = 185 bits (204), Expect = 2e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| ||||| | |||||| || || || ||||||||||| |||||||||||||| | Sbjct 7944 TTCCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTG 7885 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || || |||||||||| || || || || || || | | || ||||| || | Sbjct 7884 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7825 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| || || |||||||| ||||| ||||| || ||| || ||||| | | ||||| Sbjct 7824 GAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTA 7765 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||||| |||||||| || || || || ||||| || ||||||||| Sbjct 7764 CTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCATT 7715 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||||||||| | |||||| || || |||||||||||||| || ||||||||||| | Sbjct 7032 TTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTG 6973 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || || |||||||||| ||| || || || || || | | || ||||| || | Sbjct 6972 AAAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 6913 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| |||||||| ||||| || || || ||| || ||||| | | ||| | Sbjct 6912 GAATACCTTCTTTGTCTTGGATCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCTTCAA 6853 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | || || ||||| || || | |||||| ||||| |||||||| Sbjct 6852 CTTCAAGAGTAATAGTTTTCCCTGTTAAGGTCTTAACGAAGATCTGCAT 6804 >seq503 Length=216272 Score = 161 bits (178), Expect = 2e-34 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | || || | ||| | || || || || || ||||| || || ||||| | Sbjct 160653 TTCCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAG 160594 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | ||||| | ||||||||| || || || || || || || | || |||||||| || | Sbjct 160593 AAAGTGTGCGCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGTTGGTCTGGAG 160534 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| || |||||||||||||| || ||| ||| || || || | | ||| | Sbjct 160533 GAATACCTTCTTTATCTTGAATCTTTGCTTTCACGTTCTCAATTGTATCGGAAGCTTCAA 160474 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 |||| | |||||| |||||||| || || ||||||||||| |||||||| || Sbjct 160473 CTTCAAGGGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCATGAT 160422 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || || || ||||| || ||||| || || Sbjct 160879 CCACCACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCTGAC 160820 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| || || || || ||||| || | ||| ||||| ||||||||| Sbjct 160819 AGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGA 160760 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || || |||||||| |||||||| || || ||||||| || || ||| Sbjct 160759 ATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGATGCCTCAACT 160700 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | || || |||||||| || |||||||||||||| || |||||| Sbjct 160699 TCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCATT 160652 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | || || | ||| | || || || || || ||||| || || ||||| | Sbjct 162320 TTCCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAG 162261 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||||||| | ||||||||| | ||||| || || || || | |||||||||||| || | Sbjct 162260 AGAGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGAG 162201 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| ||||||||||| ||||| || || || || || || | | ||| | Sbjct 162200 GAATTCCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCTATCGTATCGGAAGCTTCAA 162141 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | ||||| |||||||| || |||||||| ||||| || ||||| Sbjct 162140 CTTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 162092 Score = 145 bits (160), Expect = 1e-29 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 || || |||||||| || | |||| || || || ||||| ||||| || ||||| ||||| Sbjct 162782 CCACCACGAAGGCG-AAGAACAAGATGAAGAGTTGACTCCTTTTGAATATTATAGTCGGA 162724 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | || || || || || || || ||||| || | ||| ||||| |||||||| Sbjct 162723 CAGCGTGCGACCGTCCTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGG 162664 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| ||||| || || |||||||| |||||||| ||||| ||||||| | || || Sbjct 162663 AATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCGATAGTGTCTGAAGCCTCCAC 162604 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| | || || ||||| || || ||||| || || || || |||||| Sbjct 162603 TTCTAGAGTTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTGCATT 162555 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || || |||||||| || ||||| || || Sbjct 162090 CCACCACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAGTCTGAC 162031 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| || || || || ||||| || | ||| ||||| || || ||| Sbjct 162030 AGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGA 161971 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || || |||||||| ||||| || || || ||||||| | || ||| Sbjct 161970 ATACCTTCTTTATCCTGAATCTTGGCCTTAACATTTTCAATAGTGTCTGAAGCCTCAACT 161911 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || |||||||| || |||||||||||||| || ||||| Sbjct 161910 TCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 161864 >seq2682 Length=416 Score = 147 bits (162), Expect = 4e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 ||||||| | || || || | |||| || || || || || ||||| || ||||| || Sbjct 92 TTCCTCCTCTGAGACG-AAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAGTCT 150 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || || | || ||||| || || || || ||||| || | ||| ||||| |||||| Sbjct 151 GACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCACTCTCTGTTGATCGGGT 210 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 ||||| ||||| || || |||||||| |||||||| || || ||||||| | || Sbjct 211 GGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCA 270 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| | || || |||||||| || |||||||||||||| || ||||| Sbjct 271 ACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 320 >seq129 Length=1828789 Score = 127 bits (140), Expect = 4e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 ||||||| || |||||||| || || || | |||||||| || ||||| || || || | Sbjct 1158785 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1158726 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | || | ||| || || |||||||| ||||| || || || || || || || || | Sbjct 1158725 TAAGACGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTTT 1158666 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 | || || |||| || ||||||||| | |||||||||||| || || | || || || | Sbjct 1158665 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1158606 Query 68452 ATATCTGCAT 68461 |||||||||| Sbjct 1158605 ATATCTGCAT 1158596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921558358763480