Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq739 134 1e-26 seq503 91.5 1e-13 seq1081 87.8 1e-12 >seq739 Length=1399493 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | |||||| | || || |||||||||||| ||||| ||||| | Sbjct 7031 AATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATTACCTTGGAAGTTGAAGCATC 7090 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| |||||| || ||||||||| | ||| | |||| Sbjct 7091 TGACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCA 7150 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||||||||||||||||||| || |||| | | ||||| || Sbjct 7151 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7210 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||| || || || || ||| | ||||| | | || |||||| Sbjct 7211 CATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGA 7259 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | |||||| | || || |||||||||||| ||||| ||||| | Sbjct 7259 AATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTC 7318 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| || || || ||||||||| | ||| | |||| Sbjct 7319 TGACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCA 7378 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||||||||||||||||||| || |||| | | ||||| || Sbjct 7379 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7438 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||| || || || || ||| | ||||| | | || |||||| Sbjct 7439 CATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGA 7487 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | |||||| | || || |||||||| ||| ||||| ||||| | Sbjct 7973 AATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATCACCTTGGAAGTTGAAGCATC 8032 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| |||||| || ||||||||| | ||| | |||| Sbjct 8033 TGACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCA 8092 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||||||||| ||||||||| || |||| | | ||||| || Sbjct 8093 GCAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTATAA 8152 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||| || || || || ||| | ||||| | | || |||||| Sbjct 8153 CATCCAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCGTGGAGGA 8201 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | |||||| | || || |||||||||||| ||||| ||||| | Sbjct 7487 AATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTC 7546 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| || || || ||||||||| | ||| | |||| Sbjct 7547 TGACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCA 7606 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||||||||||||||||||| || |||| | | ||||| || Sbjct 7607 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7666 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||| || || || || ||| | ||||| | | || |||||| Sbjct 7667 CATCCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGA 7715 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | |||||| | || || |||||||||||| ||||| ||||| | Sbjct 7715 AATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTC 7774 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| || || || ||||||||| | ||| | |||| Sbjct 7775 TGACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCA 7834 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||||||||||||||||||| || |||| | | ||||| || Sbjct 7835 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7894 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||| || || || || ||| | ||||| | | || |||||| Sbjct 7895 CATCCAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCGTGGAGGA 7943 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||| ||||| || || |||| || ||||| || ||||| ||||| | ||| ||||| Sbjct 6800 CAACATGCAGATCTTCGTTAAGACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGC 6859 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | || || | | || | || || || || ||||| ||| | ||| | | Sbjct 6860 TTCTGACACAATAGAGAATGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGA 6919 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||| ||| | | ||||||||||||||||| ||||||||| || |||| | | ||||| Sbjct 6920 CCAGCAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTA 6979 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||| || || || || ||| | ||||| | | || |||||| Sbjct 6980 TAACATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGA 7031 >seq503 Length=216272 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/239 (69%), Gaps = 12/239 (5%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | ||||| | || || ||||| || || | ||| ||| || | Sbjct 162319 AATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTC 162378 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACC- 21951 ||| || | | || | ||| || ||| |||||||| ||| | || | | | Sbjct 162379 AGACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCG 162438 Query 21952 -------AACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAA--AAACTATGG 22002 |||||||| | || ||||| || |||||||| |||||| | | ||||| Sbjct 162439 CCGGATCAACAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGCACACTAT-- 162496 Query 22003 CCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 | ||||||||||||||||||||||| |||||||| | || | ||| | |||||||| Sbjct 162497 CAGATTACAATATTCAGAAGGAATCGACTCTTCACCTTGTTCTTCGTCTCAGAGGAGGA 162555 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || ||| | || || ||||| || ||| | ||| ||||| | Sbjct 160425 ATGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACCCTTGAAGTTGAAGCTTCC 160484 Query 21894 GAAACGGTGGCCGATCTT--AAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACC 21951 || || | | || | | ||||||| | || |||||||| ||| | ||| | ||| Sbjct 160485 GATACAATTGA-GAACGTGAAAGCAAAGA-TTCAAGATAAAGAAGGTATTCCTCCAGACC 160542 Query 21952 AACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACA 22011 ||||||| | ||||||||||| |||||| | |||||| || | | ||||||| Sbjct 160543 AACAGAGGTTGATCTTTGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACA 160602 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||| || |||||||| || || ||| | ||| | ||| | |||||||| Sbjct 160603 ATATACAAAAGGAATCAACCCTGCATCTTGTACTTCGTCTGAGAGGAGGA 160652 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || | || || ||||| || || | ||| ||||| | Sbjct 162092 ATGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 162151 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | || ||||||| || ||||| || | ||| | ||||| Sbjct 162152 GATACGATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGAATTCCTCCAGACCAA 162211 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | ||||||||||| || ||||| |||||| || | | ||||||||| Sbjct 162212 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTCTCTGATTACAAT 162271 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || |||||||| || || ||| | ||| | ||| | |||||||| Sbjct 162272 ATACAAAAGGAATCAACCCTGCATCTTGTACTTCGTCTGAGAGGAGGA 162319 >seq1081 Length=102446 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | ||||||||||| |||||| |||| ||| | |||| | | ||||| Sbjct 20026 CAACAAAGATTAATCTTTGCTGGAAAACAATTAGAGGATGGTAGAACTTTATCAGATTAT 19967 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||||||||||||||| | || | || |||||||| |||| ||| Sbjct 19966 AATATTCAGAAGGAATCTACATTACACTTAGTGCTACGTTTAAGAGGTGGA 19916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358100536932886