Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq403 91.5 4e-15 seq102 82.4 2e-12 >seq403 Length=220788 Score = 91.5 bits (100), Expect = 4e-15 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425 |||||| || ||||||| |||| |||| || || | |||| | ||| | |||||| | Sbjct 72997 ATGTACCTTCCACAAATTCGGTGCTTCCGGGACCATTCAAAAGTTCGACGCCCTCTGCGT 73056 Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 ||| | ||| | ||||||||||||||||||| |||||||||||||||||| Sbjct 73057 TCTCGCCCTCAACATCCTCAACGAGAAGATCTACATCTTCCTCTGGTTCTGGTTC 73111 >seq102 Length=5466090 Score = 82.4 bits (90), Expect = 2e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425 |||||| || |||||||| ||| | || || | || | || | ||| || |||||| | Sbjct 397975 ATGTACCTTCCACAAATATGGTGCGTCCGGTACGGTGCAGAAATTCGATGGTCTCTGCGT 397916 Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 | ||| ||| | |||||||||||||| ||| | |||||||||||||||||| Sbjct 397915 GTTACCGTTAAACATCGTCAACGAGAAGATATACGTGTTCCTCTGGTTCTGGTTC 397861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479241196500