Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq739 140 3e-28 seq503 113 4e-20 seq2682 86.0 5e-12 >seq739 Length=1399493 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||||||| |||||||| | ||| || ||||| |||||||| ||||| Sbjct 7261 ATTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCT 7202 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | |||||| |||||||| ||||| |||| | |||||| ||||| ||| Sbjct 7201 GAAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 7142 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTC 114331 ||||| || |||||||| ||| ||| | ||| | | || | ||||| | | ||| Sbjct 7141 GGAATACCCTCTTTGTCCTGAAT-TTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTC 7083 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || || || ||||||||||| |||||||| Sbjct 7082 AACTTCCAAGGTAATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7032 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| |||||||| |||||||| | || || ||||| || ||||| ||||| Sbjct 8200 CCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAA 8141 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| | |||||| || ||||| ||||| |||| | |||||| ||||| |||||| Sbjct 8140 AGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 8081 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTCGAC 114334 || || |||||||| ||| ||| | ||| | | || | ||||| | | ||| || Sbjct 8080 ATACCCTCTTTGTCCTGAAT-TTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAAC 8022 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | ||||| || || || ||||||||||| |||||||| Sbjct 8021 TTCCAAGGTGATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7974 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||||||| |||||||| | ||| || ||||| |||||||| ||||| Sbjct 7033 ATTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCT 6974 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | |||||| || ||||| ||||| |||| | |||||| ||||| ||| Sbjct 6973 GAAAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 6914 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||| ||| | | || | ||||| | | ||| Sbjct 6913 GGAATACCTTCTTTGTCTTGGATCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCTTCA 6854 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | ||||| || || | || || || || ||||||||| Sbjct 6853 ACTTCAAGAGTAATAGTTTTCCCTGTTAAGGTCTTAACGAAGATCTGCATG 6803 >seq503 Length=216272 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | || | || |||||||||||||| || || || Sbjct 161865 ATACCACCACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAGTCT 161806 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| | ||||||||||||| |||| | | |||||| || || Sbjct 161805 GACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGC 161746 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || |||||| || | | ||||| ||||| | | || Sbjct 161745 GGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCA 161686 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | |||||| || || || |||||||||||||| ||||| Sbjct 161685 ACTTCCAGAGTTATCGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCAT 161636 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| ||||| || |||||||| | || || |||||| | |||||||||| Sbjct 160621 GTTGATTCCTTTTGTATATTGTAATCAGAAAGTGTGCGCCCATCTTCCAATTGTTTACCA 160562 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||||||||| |||||||| |||||||| || ||||||| ||| Sbjct 160561 GCAAAGATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTATCTTGAATCTTTGCTTTC 160502 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || |||| | ||| || || | ||| | ||||| || ||||| || Sbjct 160501 ACGTTCTCAATTGTATCGGAAGCTTCAACTTCAAGGGTGATAGTTTTTCCTGTCAGTGTC 160442 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 160441 TTGACGAAGATCTGCATG 160424 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | || | || ||||| || |||||||||||||| Sbjct 161110 ATACCACCACGAAGACGAAGAACAAGGTGGAGAGTTGATTCCTTCTGAATGTTGTAATC- 161052 Query 114213 CTCATAGTACGAGA--ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | ||||| | | |||||| ||||||||||| || | || | | |||||| || | Sbjct 161051 -TGATAGTGTGCGTCCATCTTCCAGTTGTTTACCCGCAAAAATCAATCTCTGTTGATCTG 160993 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 | ||||| ||||| || || ||| ||| ||||| | ||| | ||||||| | || Sbjct 160992 GCGGAATTCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCTATCGTGTCGGAAGCTT 160933 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || | || | ||||| || || || || || || ||||| ||||| Sbjct 160932 CAACTTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 160881 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| ||||| || |||||||| | || || |||||||||||| || ||| Sbjct 162288 GTTGATTCCTTTTGTATATTGTAATCAGAGAGTGTGCGCCCATCTTCAAGTTGCTTTCCA 162229 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | |||||||| |||||||| ||||||||||| ||| ||| |||| Sbjct 162228 GCAAAGATCAATCTTTGTTGGTCTGGAGGAATTCCTTCTTTGTCTTGAATTTTTGCTTTT 162169 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | || |||| | ||| || || | || | ||||| || || || || Sbjct 162168 ACATTTTCTATCGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTAAGGGTC 162109 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||| ||||| Sbjct 162108 TTCACGAAAATTTGCAT 162092 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | ||| | ||| | || || || |||||||| || || ||| | Sbjct 162782 CCACCACGAAGGCGAAGAACAAGATGAAGAGTTGACTCCTTTTGAATATTATAGTCGGAC 162723 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| || || | ||||||||||||| |||| | | |||||| || || ||| Sbjct 162722 AGCGTGCGACCGTCCTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGA 162663 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || |||||||| || |||||| || | | ||| | ||||| | | || || Sbjct 162662 ATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCGATAGTGTCTGAAGCCTCCACT 162603 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | |||||| || || || |||||||||||||| ||||| Sbjct 162602 TCTAGAGTTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTGCAT 162556 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | || | || |||||||||||||| || || || Sbjct 162093 ATACCACCACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAGTCT 162034 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| | ||||||||||||| |||| | | |||||| || || Sbjct 162033 GACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGC 161974 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || |||||| || | | ||||| ||||| | | || Sbjct 161973 GGAATACCTTCTTTATCCTGAATCTTGGCCTTAACATTTTCAATAGTGTCTGAAGCCTCA 161914 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | |||||| || || || || || || ||||| ||||| Sbjct 161913 ACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 161864 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | || | || ||||| |||||||| || || || Sbjct 160882 ATACCACCACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCT 160823 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| | ||||||||||||| |||| | | |||||| || || Sbjct 160822 GACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGT 160763 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || |||||| || | | ||||| ||||| | | || Sbjct 160762 GGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGATGCCTCA 160703 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | |||||| || || || || || || ||||| ||||| Sbjct 160702 ACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 160653 >seq2682 Length=416 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || ||||| |||||||| || || || || || || ||||| Sbjct 111 AACAAGATGAAGAGTCGATTCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTC 170 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | ||||||||||||| |||| | | |||||| || || ||||| |||||||| || Sbjct 171 CAATTGTTTACCAGCGAAGATCACTCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTG 230 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 |||||| || | | ||||| ||||| | | || || || | || | |||||| Sbjct 231 AATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTT 290 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || || || ||||| ||||| Sbjct 291 TCCTGTAAGGGTCTTGACGAAAATTTGCAT 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420105935763108