Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_009542.2 Length=33985 Score E Sequences producing significant alignments: (Bits) Value seq1913 123 5e-24 seq3883 122 2e-23 seq916 98.7 2e-16 >seq1913 Length=212763 Score = 123 bits (136), Expect = 5e-24 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 676 ACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGATGTCG 735 ||||||||||| | ||| || || || ||||| ||||| ||||| ||||| ||||| || Sbjct 83275 ACCGCATCTTCAAAGTGATCAGGCGCAAAGTGTGCATATCGCATGGTCATTTTGATATCT 83216 Query 736 GTGTGGCCGAGGATGCGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTGACTG 795 ||||||||||| || |||| || | ||||| || || |||||||| || || ||| Sbjct 83215 GTGTGGCCGAGTATTTTTTGTAAAACTAAAATGTTACCACCATTCATCATAAAATGGCTG 83156 Query 796 GCGAAGGTATGGCGCAGAACGTGGGT 821 |||||||||||||| | |||||||| Sbjct 83155 GCGAAGGTATGGCGTAATACGTGGGT 83130 >seq3883 Length=158444 Score = 122 bits (134), Expect = 2e-23 Identities = 154/210 (73%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 616 TAAGGGGC--CTCGGTCGCCACTTTGTCGCCATTTTTTAGCGCGG--TGATCGGGTTGAG 671 |||||||| ||| | |||| ||| ||||||||||||||| | | ||||| | Sbjct 35114 TAAGGGGCAACTCCGCTGCCATTTTACCGCCATTTTTTAGCGTTTAATTAGTGGGTTTAA 35055 Query 672 ACGCACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGAT 731 |||| ||||||| ||| ||||| || ||||| ||||| ||||| |||| || || Sbjct 35054 TATAGCCGCTTCTTCCAAGTGATCGGGTGCAAAGTGAGCATAACGCATTGTCACTTTAAT 34995 Query 732 GTCGGTGTGGCCGAGGATGCGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTG 791 || || || || | || ||||| ||||| || ||||||||||||||||| || || Sbjct 34994 ATCAGTATGCCCTAATATTTTTTGTAGTACCAGTATATTGCCGCCGTTCATCATAAAATG 34935 Query 792 ACTGGCGAAGGTATGGCGCAGAACGTGGGT 821 |||||||| || ||||| || ||||| || Sbjct 34934 GCTGGCGAATGTGTGGCGTAGTACGTGCGT 34905 >seq916 Length=289624 Score = 98.7 bits (108), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 676 ACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGATGTCG 735 ||| ||||||| | ||| || | || ||| ||||||| | | | || || ||||| || Sbjct 65527 ACCACATCTTCAAAGTGATCTGAAGCAAAG-GGGCATATCTCGTGGTTATTTTGATACCG 65585 Query 736 GTGTGGCCGAGGATGCGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTGACTG 795 ||||||||||| || |||| || | ||||| ||||||||||||||||| || ||| Sbjct 65586 GTGTGGCCGAGTATTTTTTGTAAAACTAAAATGTTTCCGCCGTTCATCATGAAATGGCTG 65645 Query 796 GCGAAGGTATGGCGCAGAACGTGGGT 821 |||| || ||||| | |||||||| Sbjct 65646 ACGAATGTGTGGCGTAATACGTGGGT 65671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108623228967826