Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_009821.1 Length=164270 Score E Sequences producing significant alignments: (Bits) Value seq2372 131 2e-25 seq2331 123 3e-23 seq3883 86.0 7e-12 seq1913 86.0 7e-12 >seq2372 Length=84335 Score = 131 bits (144), Expect = 2e-25 Identities = 318/470 (68%), Gaps = 14/470 (3%) Strand=Plus/Plus Query 135748 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 135807 || |||||||| | || | || ||||| || |||| ||| | |||||||| Sbjct 73647 GGGCTAAACAGCGAGATATTTTCGTTTTTAATTAAACGCTGGTACATTAATTTATTAATT 73706 Query 135808 TGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCCCTTATTGTTCTTTAAC 135867 ||||| || || || | |||||| | ||| || ||||| | || || || || | Sbjct 73707 TGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTGCGTAGC 73766 Query 135868 AC-AATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCC 135926 || ||| || |||| | ||||||||||| | || ||| | | || |||||||| || Sbjct 73767 ACCAATAAGT-TTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCC 73825 Query 135927 ACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGAT 135986 || | |||||||| || || || || || || || || || | || | ||||| || Sbjct 73826 GCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAAT 73885 Query 135987 AACGCCAGTATG--ACGAACTTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATG 136044 | |||||||| ||| |||| ||| | |||| | |||| || || ||| | Sbjct 73886 ACAACCAGTATGGAACG--CTTCGCCACCGCGGATCGGACTTCCTAAGGCACGGATCTTA 73943 Query 136045 CCAGCGTTGATACCGATACCAGCACGCTTGCTAATA--TACTTGATGATTGCATTTGCTG 136102 || || || || || || ||||| || ||| | ||| || || | || || | || | Sbjct 73944 CCGGCATTAATGCCAATTCCAGCGCG-TTG-TGATACGTATTTAACAATAGCGCTCGCGG 74001 Query 136103 TTTCGTTGATGCCCTGCAATGA--GTCATCACTTTCAATCACCACACACGAACTAAATTG 136160 | | || || | ||| || ||||| | ||||||| |||||||||||||| || Sbjct 74002 TGGCATTAATTGAGT-CAA-GACTATCATCGCACTCAATCAATACACACGAACTAAACTG 74059 Query 136161 GCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGCAGAGAGATTT 136210 ||| ||||| || ||||| || |||||||| || ||||| || || |||| Sbjct 74060 GCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTT 74109 Score = 86.0 bits (94), Expect = 7e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 133197 AATAATGTATTGTGTGCCTTTTAAGTGAAGTTGTTCATCACGAGCAATAAATTTCATGAT 133256 ||| || |||| || || | | |||||| |||||| || ||||| | ||| || || Sbjct 71593 AATCATAAATTGAGTACCGGTAAGGTGAAGAGCTTCATCGCGGGCAATCAGTTTAATAAT 71652 Query 133257 CTTCGCGTTACCTTCCAGTAAGCCACGTTCGGCAAAGCTGAAAGTACATGCAAAGGACAC 133316 || || || ||||||| ||| | |||||||||||| || | || |||||| || Sbjct 71653 TTTGGCATTTCCTTCCATTAATTCGCGTTCGGCAAAGGCAAACGAGCAGGCAAAGCTAAC 71712 Query 133317 ATAAAAACGGATTGCTTCCAGTGCATTAACGCAGTGTGCACACAGATAAA 133366 |||||| || || ||||| || ||||| |||| | ||| ||||||| Sbjct 71713 ATAAAATCGAATAGCTTCAAGCGCATTGACGCTCATTAAACAGAGATAAA 71762 >seq2331 Length=68774 Score = 123 bits (136), Expect = 3e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 53331 GTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCGCACC 53390 ||||| ||||| || ||||||||||| || || ||||| || | ||| || |||||| Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 53391 GCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGCGTCC 53450 || ||||||||||| ||||| || | |||||||| || ||||| |||| ||| ||||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 53451 AGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACCTTCGAC 53503 ||| |||| || ||||| || ||||| || || || |||||||| || Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTAC 23813 >seq3883 Length=158444 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 53317 ATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGAC 53376 |||| | |||| ||||| || || | || ||||| || || ||| ||| | | Sbjct 116564 ATTACATTGATTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAG 116505 Query 53377 TATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGAT 53436 || || || || || ||||||||||| ||||| || | || || ||||| ||||||| Sbjct 116504 AGTTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGAT 116445 Query 53437 GTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCAC 53496 ||| | || || | || |||| || |||||||||||||| | |||||||||| Sbjct 116444 TTTCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCAC 116385 Query 53497 CTTCGAC 53503 |||| || Sbjct 116384 CTTCAAC 116378 >seq1913 Length=212763 Score = 86.0 bits (94), Expect = 7e-12 Identities = 163/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 35620 AATTGTGGTCCCGCCATATTGATGACTTGCCACCTGTGCGATAATTTGAGCGGTTACAGC 35679 ||| ||||| || ||||| ||| || || || || || ||||| || ||||||||||| Sbjct 32127 AATGGTGGTGCCACCATAAATATGGCTGGCTACTTGGGCTATAATCTGTGCGGTTACAGC 32068 Query 35680 ACAAGCAACACCGATCGATTTAGGACTTTCGATTTGTGCGCTACCCAATTTAAAACCATT 35739 ||| || |||||||| ||| |||| || | |||| ||||||||| || Sbjct 32067 GGTGGCAGTTGAAATTGATTTAGGCGGTTCAATTTCAGCATTTCCCATTTTAAAACCCTT 32008 Query 35740 CTCTAACATGTCTTTGAGATTAACAAGACAGCAGTTAGTAAACGGCATAGCGGGTGCATA 35799 || ||| | | | || || || ||||||| | || | | ||| ||||| Sbjct 32007 GGTTAGCATTCCATCTAAATCAATTAGCATGCAGTTAAACATAGGGAAAAAGGGAGCATA 31948 Query 35800 ATCCATATCATGATAATGAATATCACCGTCTACATGCGCTTTATAGATGTGCTCAGGTAA 35859 ||||| ||||||||||||||| ||||| ||||||| || | || | | |||||| Sbjct 31947 ATCCAGATCATGATAATGAATTTCACCACGATCATGCGCAATAGAAATTTCTTTAGGTAA 31888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525499481817200