Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2682 159 8e-34 seq503 159 8e-34 seq129 158 3e-33 seq1081 84.2 5e-11 >seq2682 Length=416 Score = 159 bits (176), Expect = 8e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | ||| | ||| || ||||||| || ||| ||||| ||||||||||| | Sbjct 93 TCCTCCTCTGAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAGTCTGA 152 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||||||||||||||||| |||||||| || |||||||||| | ||||||| ||| Sbjct 153 CAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCACTCTCTGTTGATCGGGTGG 212 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||||||||||||| || || || || || ||||| |||| || | || || Sbjct 213 AATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCAAC 272 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || ||||| || || || || ||||||||||| || ||||| Sbjct 273 TTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 320 >seq503 Length=216272 Score = 159 bits (176), Expect = 8e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| || ||| ||||| ||||||||||| | Sbjct 160879 CCACCACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCTGAC 160820 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||||||||||||||| |||||||| || |||||||||| | ||||||| ||| Sbjct 160819 AGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGA 160760 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||||||||| || || || || || ||||| |||| || | || ||| Sbjct 160759 ATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGATGCCTCAACT 160700 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| || || || || ||||||||||| || |||||| Sbjct 160699 TCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCATT 160652 Score = 159 bits (176), Expect = 8e-34 Identities = 174/230 (76%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| || ||||||||| ||||||||||| | Sbjct 162090 CCACCACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAGTCTGAC 162031 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||||||||||||||| |||||||| || |||||||||| | ||||||| ||||| Sbjct 162030 AGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGA---TCTGGC 161974 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||||||||| || || || || || ||||| |||| || | || Sbjct 161973 GGAATACCTTCTTTATCCTGAATCTTGGCCTTAACATTTTCAATAGTGTCTGAAGCCTCA 161914 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| || || || || ||||||||||| || ||||| Sbjct 161913 ACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 161864 Score = 147 bits (162), Expect = 5e-30 Identities = 172/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| || ||||||||| ||||||||||| | Sbjct 161862 CCACCACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAGTCTGAC 161803 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||||||||||||||| |||||||| || |||||||||| | ||||||| ||||| Sbjct 161802 AGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGA---TCTGGC 161746 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||||||||| || || || || || ||||| |||| || | || Sbjct 161745 GGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCA 161686 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || || ||||| || || || || || || || || || |||||| Sbjct 161685 ACTTCCAGAGTTATCGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 161635 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || ||||||| || || ||||| ||||||||||||| Sbjct 162782 CCACCACGAAGGCGAAGAACAAGATGAAGAGTTGACTCCTTTTGAATATTATAGTCGGAC 162723 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || |||||||| || |||||||||| | ||||||| ||| Sbjct 162722 AGCGTGCGACCGTCCTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGA 162663 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||||||||| || || || || || ||||| |||| || | || ||| Sbjct 162662 ATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCGATAGTGTCTGAAGCCTCCACT 162603 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||| || || || || || || || |||||| Sbjct 162602 TCTAGAGTTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTGCATT 162555 Score = 143 bits (158), Expect = 6e-29 Identities = 164/219 (75%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 |||||| ||||| | || ||| ||||| ||||| || || | || ||||| || || Sbjct 160637 AAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAGAAAGTGTGCGCCCATC 160578 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTT 288377 ||| |||||||| || || ||||||| | |||||| ||||| || |||||||| Sbjct 160577 TTCCAATTGTTTACCAGCAAAGATCAACCTCTGTTGG---TCTGGAGGAATACCTTCTTT 160521 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||| || || || ||||||||||| || || | |||| | ||| ||||| || ||||| Sbjct 160520 ATCTTGAATCTTTGCTTTCACGTTCTCAATTGTATCGGAAGCTTCAACTTCAAGGGTGAT 160461 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || || ||||| ||||||||||| |||||||| || Sbjct 160460 AGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCATGAT 160422 Score = 129 bits (142), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 |||||| ||||| | || ||| ||||| ||||| || || | ||| ||||| || || Sbjct 162304 AAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAGAGAGTGTGCGCCCATC 162245 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTT 288377 ||| | ||| ||||| || ||||||| | ||||| ||||| ||||||||||| Sbjct 162244 TTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGG---TCTGGAGGAATTCCTTCTTT 162188 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 || || ||||| ||||| || |||||||| | |||| | ||| ||||| || ||||| Sbjct 162187 GTCTTGAATTTTTGCTTTTACATTTTCTATCGTATCGGAAGCTTCAACTTCAAGTGTGAT 162128 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| ||||| || ||||| Sbjct 162127 AGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 162092 Score = 102 bits (112), Expect = 2e-16 Identities = 165/237 (70%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | ||| | ||| || || |||| || ||| || || ||||| || || | Sbjct 162555 TCCTCCTCTGAGACGAAGAACAAGGTGAAGAGTCGATTCCTTCTGAATATTGTAATCTGA 162496 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA-----A 288360 || |||||||| ||||| | |||||| || || || |||| | ||||||| | Sbjct 162495 TAGTGTGCGTCCATCTTCCAGTTGTTTACCCGCAAAAATCAATCTCTGTTGATCCGGCGA 162436 Query 288361 TCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTC 288417 ||||| || |||||||||||||| || || || || || ||||| |||| || Sbjct 162435 TCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCTTGACATTTTCGATAGTGTCTGAA 162376 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || ||||| || || ||||| ||||| || || || || || || || |||||| Sbjct 162375 GCCTCCACTTCTAGAGTTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTGCATT 162319 Score = 95.1 bits (104), Expect = 3e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | ||| | ||| || ||||||| || ||| ||||| ||||||||||| | Sbjct 161635 TCCTCCTCTGAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAGTCTGA 161576 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 ||||||||||||||||| |||||||| || |||||||||| | |||||| Sbjct 161575 CAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTTTGTTGA 161524 >seq129 Length=1828789 Score = 158 bits (174), Expect = 3e-33 Identities = 149/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 ||||||| |||||||| || | || || ||||| ||||| ||||| ||||| || || | Sbjct 1158785 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1158726 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | ||||| || ||| | ||| ||||||||||||||||||||||| ||||| || |||| Sbjct 1158725 TAAGACGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTTT 1158666 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | |||| ||| | ||||||||| || ||||| || || || |||| ||| || || | Sbjct 1158665 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1158606 Query 288464 ATATCTGCAT 288473 |||||||||| Sbjct 1158605 ATATCTGCAT 1158596 >seq1081 Length=102446 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||||||||| || ||||| ||||| || ||||| |||| ||| | || || || Sbjct 20401 CCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCGATAGTATCTGATGCCTCGACCTCA 20460 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || || |||||||| || ||||||||||| Sbjct 20461 AGAGTGATAGTCTTGCCTGTTAGAGTCTTCACAAATATCTGCAT 20504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179570379484002