Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq2372 378 2e-100 >seq2372 Length=84335 Score = 378 bits (418), Expect = 2e-100 Identities = 756/1103 (69%), Gaps = 32/1103 (3%) Strand=Plus/Minus Query 51861 CTTACACTACCTTTTCACAAACCAAGAATAACCAATTACTAGAGCCAATGTTCTTTGGTC 51920 |||| || | ||||||||| | | ||| | ||| | |||||||||||||| |||| Sbjct 72338 CTTATACGATTTTTTCACAACACTACAATGATCAACTTAAGGAGCCAATGTTCTTAGGTC 72279 Query 51921 AGAACGTTAACGTTGCTCGATATGACCAACAGAAGTACGGCATATTCGAGAAGTTAATTG 51980 | || ||||| || || ||||| || || || || | || || || || || |||| Sbjct 72278 AACCTGTGAACGTAGCACGCTATGATCAGCAAAAATATGAGATGTTTGAAAAATTGATTG 72219 Query 51981 AGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCGTATTG 52040 | |||||| | || || || ||||| || |||||||| || || | | || ||||||| Sbjct 72218 AAAAACAACTCTCCTTTTTTTGGCGTCCAGAAGAGGTGGATATTACTAAAGATCGTATTG 72159 Query 52041 ATTATCAGAAGCTACCTGCAAACGAACAACACATTTTCACCAGTAATCTTCGTTATCAGA 52100 |||||||| ||||||||| | | ||| |||| || || | ||||||| | ||||| | Sbjct 72158 ATTATCAGCAGCTACCTGAACATGAAAAACATATCTTTATCAGTAATTTAAAATATCAAA 72099 Query 52101 TTCTTCTT-GACTCAATTCAGGGACGTGGGCCCAACA---CAGTTTTGCTTCCAATCGTG 52156 ||| || ||||| ||||| |||||| | || || || | || | || ||| Sbjct 72098 C-CTTATTAGACTCCATTCAAGGACGTAGTCCAAATGTGGCATTATTACCTCTAATTTCT 72040 Query 52157 AGCATTCCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCA 52216 | | |||||||| || || ||| | ||||| ||||| || || |||||||||||||| Sbjct 72039 ATC---CCTGAATTAGAAACATGGGTAGAAACTTGGTCATTTTCTGAGACTATTCATTCG 71983 Query 52217 CGTTCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTATCTTTGATGAA 52276 || || ||||| || || ||||| |||||||| | || || | || |||||||| Sbjct 71982 CGCTCCTATACGCATATTATTCGCAATATTGTCAATGATCCTTCTTTGATTTTTGATGAT 71923 Query 52277 ATCGTAACTAACGAACACATCAAGGCACGAGCAATTGGCATCTCCCAATATTATGACGAA 52336 || || | ||| | | ||| | ||| |||| | ||| | | |||||||| || Sbjct 71922 ATTGTTAATAATCAGGAGATCCAAAAACGTGCAACGGATATCGCTCGTTATTATGATGAT 71863 Query 52337 CTCCAGCAACT--CACTGCATTA-TGGCAGTTGTTCGGAGAAGGGAGCCATGC------T 52387 | | ||| |||| |||| | || || || || || | |||| | Sbjct 71862 TT--AATTACTACCACTA-ATTACTACCATTTATTAGGTACGGGTACCCATCAAATTAAT 71806 Query 52388 GGT-----CATGAA-ATTAGTCTGCGTGAGTTGAAGAAGAAGCTGTATTTATGCCTCATG 52441 ||| ||| | |||| ||||||| || ||||| || || ||| | || | ||| Sbjct 71805 GGTAAAACCATTACCATTAACTTGCGTGAATTAAAGAAAAAACTTTATCTCTGTTTAATG 71746 Query 52442 TCTATCAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTGCCTTC 52501 ||||||| | ||||| ||||| || ||||| |||||||| ||||| |||||||| Sbjct 71745 AGCGTCAATGCGCTTGAAGCTATTCGATTTTATGTTAGCTTTGCCTGCTCGTTTGCCTTT 71686 Query 52502 GCAGAACGTAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTTAATTGCACGAGATGAA 52561 || ||||| | |||||||||||||||||||| |||||| | ||||| || |||||| Sbjct 71685 GCCGAACGCGAATTAATGGAAGGAAATGCCAAAATTATTAAACTGATTGCCCGCGATGAA 71626 Query 52562 GCACTTCATTTGACAGGAACTCAGCACATGCTGAA-CCTTCTTGCAAGTGGAAAAGATGA 52620 || ||||| | || || ||||| ||| | || | | || ||||| ||||||| Sbjct 71625 GCTCTTCACCTTACCGGTACTCAATTTATGATTAATACGTTACGC-AGTGGTGAAGATGA 71567 Query 52621 CCCAGAAATGGGTGAAATTGCTGCTGAATGCCGCCAAGAATGCCAGAAATTGTTCGAAGA 52680 |||||||||| ||| || ||| || |||| ||| | ||| | | |||| | | Sbjct 71566 TCCAGAAATGGCTGATATCGCTAAAGAGTGCCAACAACAGTGCTATGATCTGTTTGTCCA 71507 Query 52681 TGCTGCTCAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAAGATGGCTCTATGATTGG 52740 || || | |||||||| |||||||| ||||| |||| || || || ||||| || Sbjct 71506 AGCAGCAAATCAAGAGAAAGATTGGGCGGATTACCTGTTTTCAGGCGGATCAATGATCGG 71447 Query 52741 -CTTAAACAAGCAAATTCTATGCGGATATGTGGAATATATCACGAATATTCGTATGCAAG 52799 || || | || | || | || |||| | |||||||| || ||||| |||||||||| Sbjct 71446 TCTAAATCGAG-ATATCTTGTGTCAATATATTGAATATATTACCAATATCCGTATGCAAG 71388 Query 52800 CAGTTGGATTA-GATGCTCCATTCAAAGGTGCAACTAACCCGATTCCGTGGATTAATGCA 52858 |||| || ||| | | || | || |||| || ||||| ||||||||| Sbjct 71387 CAGTGGGCTTACCCTTACCTTTTGCGACACGC-TCTAATCCTATTCCATGGATTAATAAT 71329 Query 52859 TGGTTGAATTCGGATGCTGTACAGGTTGCTCCACAGGAAACGGAGATTAGTTCCTACCTG 52918 |||||| || ||| || || || || ||||| ||| | || || || || || | Sbjct 71328 TGGTTGGTCTCAGATAACGTTCAAGTCGCCCCACAAGAATCAGAAATCAGCTCTTATTTA 71269 Query 52919 GTCGGGCAAATTGACTCCGAAGT 52941 ||||| |||||||| ||| ||| Sbjct 71268 GTCGGTCAAATTGATGCCGCAGT 71246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169387217482246